Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

A5F283

- A5F283_VIBC3

UniProt

A5F283 - A5F283_VIBC3

Protein
Submitted name:

Putative glutamate decarboxylase

Gene

VC0395_A0719

Organism
Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 50 (01 Oct 2014)
      Sequence version 1 (12 Jun 2007)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Cofactori

    Pyridoxal phosphate.UniRule annotation

    GO - Molecular functioni

    1. carboxy-lyase activity Source: InterPro
    2. pyridoxal phosphate binding Source: InterPro

    GO - Biological processi

    1. carboxylic acid metabolic process Source: InterPro

    Keywords - Molecular functioni

    LyaseUniRule annotation

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative glutamate decarboxylaseImported
    Gene namesi
    Ordered Locus Names:VC0395_A0719Imported, VC395_1216Imported
    OrganismiVibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)Imported
    Taxonomic identifieri345073 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
    ProteomesiUP000000249: Chromosome 2, UP000001630: Chromosome I

    Interactioni

    Protein-protein interaction databases

    STRINGi345073.VC0395_A0719.

    Structurei

    3D structure databases

    ProteinModelPortaliA5F283.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the group II decarboxylase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0076.
    HOGENOMiHOG000282553.
    KOiK01580.
    OMAiARYFRQP.

    Family and domain databases

    Gene3Di3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProiIPR022517. Asp_decarboxylase_pyridox.
    IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view]
    PfamiPF00282. Pyridoxal_deC. 1 hit.
    [Graphical view]
    SUPFAMiSSF53383. SSF53383. 1 hit.
    TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A5F283-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVSEHKSAQV NFDSLLKIFT VPEGPDSTLT KIDEELSRNL NHFLRKHIVA    50
    EEKPLKEIEK DFSNAHIPEQ PQFVSDHTQY LLDTLVSHSV HTASPSFIGH 100
    MTSALPYFLM PLSKIMIALN QNLVKIETSK AFTPLERQVL GMIHRLIYGE 150
    TDHFYQQWMH SAEHSLGAFC SGGTIANITA LWVARNNALK AEGDFPGVEK 200
    AGLFKAMRHY GHEGLAILVS ERGHYSLKKA ADVLGIGQEG LVAVKTDAHN 250
    RICPHDLEQK ITELKANKIK VFAVVGVAGT TETGNIDPLR TIAQICQREQ 300
    IHFHIDAAWG GATLMSNRYR GLLDGVELAD SVTIDAHKQL YIPMGAGMVL 350
    FKDPNAMRSI EHHAQYILRQ GSKDLGSHTL EGSRSGMAML VYASMHIISR 400
    PGYQLLIDQS IEKARYFADL IDAQTDFELV SQPELCLLTY RYLPEHVRMA 450
    LEKSQGVQRA QLNELLNELT KFIQKKQRET GKSFVSRTQL NPHQWDKLAT 500
    IVFRVVLANP LTTKEILHNV LDEQREIAQQ APKLMRQIEH LTQCILNQ 548
    Length:548
    Mass (Da):61,693
    Last modified:June 12, 2007 - v1
    Checksum:iDCBFD48556AF50B2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000627 Genomic DNA. Translation: ABQ20604.1.
    CP001235 Genomic DNA. Translation: ACP09226.1.
    RefSeqiYP_001216669.1. NC_009457.1.
    YP_002819462.1. NC_012582.1.

    Genome annotation databases

    EnsemblBacteriaiABQ20604; ABQ20604; VC0395_A0719.
    ACP09226; ACP09226; VC395_1216.
    GeneIDi5137142.
    7775164.
    KEGGivco:VC0395_A0719.
    vcr:VC395_1216.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000627 Genomic DNA. Translation: ABQ20604.1 .
    CP001235 Genomic DNA. Translation: ACP09226.1 .
    RefSeqi YP_001216669.1. NC_009457.1.
    YP_002819462.1. NC_012582.1.

    3D structure databases

    ProteinModelPortali A5F283.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 345073.VC0395_A0719.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABQ20604 ; ABQ20604 ; VC0395_A0719 .
    ACP09226 ; ACP09226 ; VC395_1216 .
    GeneIDi 5137142.
    7775164.
    KEGGi vco:VC0395_A0719.
    vcr:VC395_1216.

    Phylogenomic databases

    eggNOGi COG0076.
    HOGENOMi HOG000282553.
    KOi K01580.
    OMAi ARYFRQP.

    Family and domain databases

    Gene3Di 3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProi IPR022517. Asp_decarboxylase_pyridox.
    IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view ]
    Pfami PF00282. Pyridoxal_deC. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53383. SSF53383. 1 hit.
    TIGRFAMsi TIGR03799. NOD_PanD_pyr. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Heidelberg J.
      Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 39541 / Classical Ogawa 395 / O395Imported and O395Imported.
    2. "A recalibrated molecular clock and independent origins for the cholera pandemic clones."
      Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
      PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 39541 / Classical Ogawa 395 / O395 and O395Imported.

    Entry informationi

    Entry nameiA5F283_VIBC3
    AccessioniPrimary (citable) accession number: A5F283
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 12, 2007
    Last sequence update: June 12, 2007
    Last modified: October 1, 2014
    This is version 50 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3