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A5F0M5 (A5F0M5_VIBC3) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length690 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
A5F0M5 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: 7C82C00C928FDF41

FASTA69077,332
        10         20         30         40         50         60 
MKLNALTLSL LSALALPALA SPASTANLTV ATTTNSRDFP LQADEPLVIP LTKGDYTLTI 

        70         80         90        100        110        120 
SGIGGDCPPV PEQEIKFNTP IALNCHVPTQ LPLSIRFTGD YAFQWQAQNN TLTFVRQTTK 

       130        140        150        160        170        180 
AAKTEFHRPI PNVSCEVYQG GEVTLDLASS FADGTELQDA MTGQVVTIEQ GKVRLTPSAN 

       190        200        210        220        230        240 
SGGLVLLEPK QTAKAEPKQP FTYRNANIYF VMVDRFYNAD PSNDGSYGRH KDGQEEIGTF 

       250        260        270        280        290        300 
HGGDLKGVIA KLDHIQSLGT DAIWLSPIVE QVHGFVGGGE KGSFPFYAYH GYWTRDFTKI 

       310        320        330        340        350        360 
DANFGKDEDL QTLVREAHRR GIKILMDAVI NHAGYATLAD LQQDAVQVVN APMLPERWND 

       370        380        390        400        410        420 
WKPSADENWH SFHQAIDYQS KNWQQWWGPD WVRAGLPGYP APGSSDITMN LAGLPDFRTE 

       430        440        450        460        470        480 
SPQAVTPPQW LLNNPGTRVV SKPNYTVADY LIEWQSDWVR RFGIDGFRID TVKHVEGEVW 

       490        500        510        520        530        540 
QRLKQRATES LAAWRKDNNQ SGEPFWMMGE VWGHGAYRSP YFDDGFDALI NFDIQKRMDN 

       550        560        570        580        590        600 
GAACLSQMAM VYRDYAQTLA KYPDFNPVSY MSSHDTELFF GRFKSLDMQR NAANALLLTP 

       610        620        630        640        650        660 
GAIQVYYGDE VAREAGPYAD DFHQGTRSDM PWEWNAERQA LLKHWQTLGQ FRQRHPAIGT 

       670        680        690 
GEHREIAQSN AYVFTRTLGE DKVVVAFVGR 

« Hide

References

[1]Heidelberg J.
Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 39541 / Classical Ogawa 395 / O395 and O395 EMBL ABQ18335.1.
[2]"A recalibrated molecular clock and independent origins for the cholera pandemic clones."
Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 39541 / Classical Ogawa 395 / O395 and O395 EMBL ACP11716.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000626 Genomic DNA. Translation: ABQ18335.1.
CP001236 Genomic DNA. Translation: ACP11716.1.
RefSeqYP_001215218.1. NC_009456.1.
YP_002821952.1. NC_012583.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING345073.VC0395_0377.

Protein family/group databases

CAZyGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABQ18335; ABQ18335; VC0395_0377.
ACP11716; ACP11716; VC395_A0884.
GeneID5134239.
7777946.
KEGGvco:VC0395_0377.
vcr:VC395_A0884.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHOG000273912.
KOK01176.
OMAALINFDM.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA5F0M5_VIBC3
AccessionPrimary (citable) accession number: A5F0M5
Entry history
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: July 9, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)