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Protein
Submitted name:

Alpha-amylase

Gene

malS

Organism
Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. calcium ion binding Source: InterPro

GO - Biological processi

  1. alpha-glucan catabolic process Source: InterPro
  2. cellular oligosaccharide catabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylaseImported (EC:3.2.1.1Imported)
Gene namesi
Name:malSImported
Ordered Locus Names:VC0395_0377Imported, VC395_A0884Imported
OrganismiVibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)Imported
Taxonomic identifieri345073 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000000249: Chromosome 1, UP000001630: Chromosome II

Subcellular locationi

GO - Cellular componenti

  1. periplasmic space Source: InterPro
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi345073.VC0395_0377.

Structurei

3D structure databases

ProteinModelPortaliA5F0M5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000273912.
KOiK01176.
OMAiLRSFMNW.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

A5F0M5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLNALTLSL LSALALPALA SPASTANLTV ATTTNSRDFP LQADEPLVIP
60 70 80 90 100
LTKGDYTLTI SGIGGDCPPV PEQEIKFNTP IALNCHVPTQ LPLSIRFTGD
110 120 130 140 150
YAFQWQAQNN TLTFVRQTTK AAKTEFHRPI PNVSCEVYQG GEVTLDLASS
160 170 180 190 200
FADGTELQDA MTGQVVTIEQ GKVRLTPSAN SGGLVLLEPK QTAKAEPKQP
210 220 230 240 250
FTYRNANIYF VMVDRFYNAD PSNDGSYGRH KDGQEEIGTF HGGDLKGVIA
260 270 280 290 300
KLDHIQSLGT DAIWLSPIVE QVHGFVGGGE KGSFPFYAYH GYWTRDFTKI
310 320 330 340 350
DANFGKDEDL QTLVREAHRR GIKILMDAVI NHAGYATLAD LQQDAVQVVN
360 370 380 390 400
APMLPERWND WKPSADENWH SFHQAIDYQS KNWQQWWGPD WVRAGLPGYP
410 420 430 440 450
APGSSDITMN LAGLPDFRTE SPQAVTPPQW LLNNPGTRVV SKPNYTVADY
460 470 480 490 500
LIEWQSDWVR RFGIDGFRID TVKHVEGEVW QRLKQRATES LAAWRKDNNQ
510 520 530 540 550
SGEPFWMMGE VWGHGAYRSP YFDDGFDALI NFDIQKRMDN GAACLSQMAM
560 570 580 590 600
VYRDYAQTLA KYPDFNPVSY MSSHDTELFF GRFKSLDMQR NAANALLLTP
610 620 630 640 650
GAIQVYYGDE VAREAGPYAD DFHQGTRSDM PWEWNAERQA LLKHWQTLGQ
660 670 680 690
FRQRHPAIGT GEHREIAQSN AYVFTRTLGE DKVVVAFVGR
Length:690
Mass (Da):77,332
Last modified:June 12, 2007 - v1
Checksum:i7C82C00C928FDF41
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000626 Genomic DNA. Translation: ABQ18335.1.
CP001236 Genomic DNA. Translation: ACP11716.1.
RefSeqiYP_001215218.1. NC_009456.1.
YP_002821952.1. NC_012583.1.

Genome annotation databases

EnsemblBacteriaiABQ18335; ABQ18335; VC0395_0377.
ACP11716; ACP11716; VC395_A0884.
GeneIDi5134239.
7777946.
KEGGivco:VC0395_0377.
vcr:VC395_A0884.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000626 Genomic DNA. Translation: ABQ18335.1.
CP001236 Genomic DNA. Translation: ACP11716.1.
RefSeqiYP_001215218.1. NC_009456.1.
YP_002821952.1. NC_012583.1.

3D structure databases

ProteinModelPortaliA5F0M5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi345073.VC0395_0377.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABQ18335; ABQ18335; VC0395_0377.
ACP11716; ACP11716; VC395_A0884.
GeneIDi5134239.
7777946.
KEGGivco:VC0395_0377.
vcr:VC395_A0884.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000273912.
KOiK01176.
OMAiLRSFMNW.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Heidelberg J.
    Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39541 / Classical Ogawa 395 / O395 and O395Imported.
  2. "A recalibrated molecular clock and independent origins for the cholera pandemic clones."
    Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
    PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39541 / Classical Ogawa 395 / O395Imported and O395Imported.

Entry informationi

Entry nameiA5F0M5_VIBC3
AccessioniPrimary (citable) accession number: A5F0M5
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: January 7, 2015
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.