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A5F0M5

- A5F0M5_VIBC3

UniProt

A5F0M5 - A5F0M5_VIBC3

Protein
Submitted name:

Alpha-amylase

Gene

malS

Organism
Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 48 (01 Oct 2014)
      Sequence version 1 (12 Jun 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB-EC
    2. calcium ion binding Source: InterPro

    GO - Biological processi

    1. alpha-glucan catabolic process Source: InterPro
    2. cellular oligosaccharide catabolic process Source: InterPro

    Keywords - Molecular functioni

    GlycosidaseImported, Hydrolase

    Protein family/group databases

    CAZyiGH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Alpha-amylaseImported (EC:3.2.1.1Imported)
    Gene namesi
    Name:malSImported
    Ordered Locus Names:VC0395_0377Imported, VC395_A0884Imported
    OrganismiVibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)Imported
    Taxonomic identifieri345073 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
    ProteomesiUP000000249: Chromosome 1, UP000001630: Chromosome II

    Subcellular locationi

    GO - Cellular componenti

    1. periplasmic space Source: InterPro

    Interactioni

    Protein-protein interaction databases

    STRINGi345073.VC0395_0377.

    Structurei

    3D structure databases

    ProteinModelPortaliA5F0M5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0366.
    HOGENOMiHOG000273912.
    KOiK01176.
    OMAiALINFDM.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTiSM00642. Aamy. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A5F0M5-1 [UniParc]FASTAAdd to Basket

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    MKLNALTLSL LSALALPALA SPASTANLTV ATTTNSRDFP LQADEPLVIP    50
    LTKGDYTLTI SGIGGDCPPV PEQEIKFNTP IALNCHVPTQ LPLSIRFTGD 100
    YAFQWQAQNN TLTFVRQTTK AAKTEFHRPI PNVSCEVYQG GEVTLDLASS 150
    FADGTELQDA MTGQVVTIEQ GKVRLTPSAN SGGLVLLEPK QTAKAEPKQP 200
    FTYRNANIYF VMVDRFYNAD PSNDGSYGRH KDGQEEIGTF HGGDLKGVIA 250
    KLDHIQSLGT DAIWLSPIVE QVHGFVGGGE KGSFPFYAYH GYWTRDFTKI 300
    DANFGKDEDL QTLVREAHRR GIKILMDAVI NHAGYATLAD LQQDAVQVVN 350
    APMLPERWND WKPSADENWH SFHQAIDYQS KNWQQWWGPD WVRAGLPGYP 400
    APGSSDITMN LAGLPDFRTE SPQAVTPPQW LLNNPGTRVV SKPNYTVADY 450
    LIEWQSDWVR RFGIDGFRID TVKHVEGEVW QRLKQRATES LAAWRKDNNQ 500
    SGEPFWMMGE VWGHGAYRSP YFDDGFDALI NFDIQKRMDN GAACLSQMAM 550
    VYRDYAQTLA KYPDFNPVSY MSSHDTELFF GRFKSLDMQR NAANALLLTP 600
    GAIQVYYGDE VAREAGPYAD DFHQGTRSDM PWEWNAERQA LLKHWQTLGQ 650
    FRQRHPAIGT GEHREIAQSN AYVFTRTLGE DKVVVAFVGR 690
    Length:690
    Mass (Da):77,332
    Last modified:June 12, 2007 - v1
    Checksum:i7C82C00C928FDF41
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000626 Genomic DNA. Translation: ABQ18335.1.
    CP001236 Genomic DNA. Translation: ACP11716.1.
    RefSeqiYP_001215218.1. NC_009456.1.
    YP_002821952.1. NC_012583.1.

    Genome annotation databases

    EnsemblBacteriaiABQ18335; ABQ18335; VC0395_0377.
    ACP11716; ACP11716; VC395_A0884.
    GeneIDi5134239.
    7777946.
    KEGGivco:VC0395_0377.
    vcr:VC395_A0884.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000626 Genomic DNA. Translation: ABQ18335.1 .
    CP001236 Genomic DNA. Translation: ACP11716.1 .
    RefSeqi YP_001215218.1. NC_009456.1.
    YP_002821952.1. NC_012583.1.

    3D structure databases

    ProteinModelPortali A5F0M5.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 345073.VC0395_0377.

    Protein family/group databases

    CAZyi GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABQ18335 ; ABQ18335 ; VC0395_0377 .
    ACP11716 ; ACP11716 ; VC395_A0884 .
    GeneIDi 5134239.
    7777946.
    KEGGi vco:VC0395_0377.
    vcr:VC395_A0884.

    Phylogenomic databases

    eggNOGi COG0366.
    HOGENOMi HOG000273912.
    KOi K01176.
    OMAi ALINFDM.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTi SM00642. Aamy. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Heidelberg J.
      Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 39541 / Classical Ogawa 395 / O395 and O395Imported.
    2. "A recalibrated molecular clock and independent origins for the cholera pandemic clones."
      Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
      PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 39541 / Classical Ogawa 395 / O395Imported and O395Imported.

    Entry informationi

    Entry nameiA5F0M5_VIBC3
    AccessioniPrimary (citable) accession number: A5F0M5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 12, 2007
    Last sequence update: June 12, 2007
    Last modified: October 1, 2014
    This is version 48 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3