Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

A5EYX2 (A5EYX2_VIBC3) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein attributes

Sequence length466 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Ontologies

Keywords
   Molecular functionGlycosidase EMBL ABQ18339.1
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionalpha-amylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A5EYX2 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: 7CABB6C280C1EC8F

FASTA46652,555
        10         20         30         40         50         60 
MKSSYVVLCA TFAAASFTSS VQAEAILHAF NWKYADVTAN AAQIAAAGYK KVLISPALKS 

        70         80         90        100        110        120 
SGNEWWARYQ PQDLRVIDSP LGNKTDLQTL IKTLQDYGVE VYSDVVFNHM ANESWKRSDL 

       130        140        150        160        170        180 
NYPGSEVLAS YTNQAYYYQQ QKLFGDLSHN LFSQNDFHPE GCITDWGNPG HVQYWRLCGG 

       190        200        210        220        230        240 
AGDRGLPDLD ANAWVINQQR AYLQALKQMG IRGFRIDAVK HMSQYHIDQV FTPEIISGMH 

       250        260        270        280        290        300 
VFGEVITSGG QGDGSYDAFL APYLNNTTHA AYDFPLFASI RAAFSYQGSM SQLHDPQAYG 

       310        320        330        340        350        360 
QALPNARAIT FAITHDIPTN DGFRYQILNP QDEQLAYAYL LGKDGGTPLI YSDDLADHED 

       370        380        390        400        410        420 
KDNGRWANVW NQPSMQHMLR FHNAMQGKPM TVMYSDSCLL LFKRGKEGVV GINKCGESKN 

       430        440        450        460 
VTIDTYQHEF NWYQTYQDTL SDDRFSVSSR YHTLTIPARV ARMWML 

« Hide

References

[1]Heidelberg J.
Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 39541 / Classical Ogawa 395 / O395 and O395 EMBL ABQ18339.1.
[2]"A recalibrated molecular clock and independent origins for the cholera pandemic clones."
Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 39541 / Classical Ogawa 395 / O395 and O395 EMBL ACP11128.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000626 Genomic DNA. Translation: ABQ18339.1.
CP001236 Genomic DNA. Translation: ACP11128.1.
RefSeqYP_001215815.1. NC_009456.1.
YP_002821364.1. NC_012583.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING345073.VC0395_0979.

Protein family/group databases

CAZyGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABQ18339; ABQ18339; VC0395_0979.
ACP11128; ACP11128; VC395_A0287.
GeneID5135031.
7777358.
KEGGvco:VC0395_0979.
vcr:VC395_A0287.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHOG000274290.
KOK01176.
OMADLDPNNW.
ProtClustDBCLSK869574.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSPR00110. ALPHAAMYLASE.
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA5EYX2_VIBC3
AccessionPrimary (citable) accession number: A5EYX2
Entry history
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: April 16, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)