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A5EYX2

- A5EYX2_VIBC3

UniProt

A5EYX2 - A5EYX2_VIBC3

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Protein

Alpha-amylase

Gene
amy1, VC0395_0979, VC395_A0287
Organism
Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Name:amy1Imported
Ordered Locus Names:VC0395_0979Imported, VC395_A0287Imported
OrganismiVibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)Imported
Taxonomic identifieri345073 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000001630: Chromosome II

Interactioni

Protein-protein interaction databases

STRINGi345073.VC0395_0979.

Structurei

3D structure databases

ProteinModelPortaliA5EYX2.

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000274290.
KOiK01176.
OMAiDLDPNNW.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

A5EYX2-1 [UniParc]FASTAAdd to Basket

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MKSSYVVLCA TFAAASFTSS VQAEAILHAF NWKYADVTAN AAQIAAAGYK    50
KVLISPALKS SGNEWWARYQ PQDLRVIDSP LGNKTDLQTL IKTLQDYGVE 100
VYSDVVFNHM ANESWKRSDL NYPGSEVLAS YTNQAYYYQQ QKLFGDLSHN 150
LFSQNDFHPE GCITDWGNPG HVQYWRLCGG AGDRGLPDLD ANAWVINQQR 200
AYLQALKQMG IRGFRIDAVK HMSQYHIDQV FTPEIISGMH VFGEVITSGG 250
QGDGSYDAFL APYLNNTTHA AYDFPLFASI RAAFSYQGSM SQLHDPQAYG 300
QALPNARAIT FAITHDIPTN DGFRYQILNP QDEQLAYAYL LGKDGGTPLI 350
YSDDLADHED KDNGRWANVW NQPSMQHMLR FHNAMQGKPM TVMYSDSCLL 400
LFKRGKEGVV GINKCGESKN VTIDTYQHEF NWYQTYQDTL SDDRFSVSSR 450
YHTLTIPARV ARMWML 466
Length:466
Mass (Da):52,555
Last modified:June 12, 2007 - v1
Checksum:i7CABB6C280C1EC8F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000626 Genomic DNA. Translation: ABQ18339.1.
CP001236 Genomic DNA. Translation: ACP11128.1.
RefSeqiYP_001215815.1. NC_009456.1.
YP_002821364.1. NC_012583.1.

Genome annotation databases

EnsemblBacteriaiABQ18339; ABQ18339; VC0395_0979.
ACP11128; ACP11128; VC395_A0287.
GeneIDi5135031.
7777358.
KEGGivco:VC0395_0979.
vcr:VC395_A0287.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000626 Genomic DNA. Translation: ABQ18339.1 .
CP001236 Genomic DNA. Translation: ACP11128.1 .
RefSeqi YP_001215815.1. NC_009456.1.
YP_002821364.1. NC_012583.1.

3D structure databases

ProteinModelPortali A5EYX2.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 345073.VC0395_0979.

Protein family/group databases

CAZyi GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABQ18339 ; ABQ18339 ; VC0395_0979 .
ACP11128 ; ACP11128 ; VC395_A0287 .
GeneIDi 5135031.
7777358.
KEGGi vco:VC0395_0979.
vcr:VC395_A0287.

Phylogenomic databases

eggNOGi COG0366.
HOGENOMi HOG000274290.
KOi K01176.
OMAi DLDPNNW.

Family and domain databases

Gene3Di 3.20.20.80. 1 hit.
InterProi IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
[Graphical view ]
PRINTSi PR00110. ALPHAAMYLASE.
SUPFAMi SSF51445. SSF51445. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Heidelberg J.
    Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39541 / Classical Ogawa 395 / O395 and O395Imported.
  2. "A recalibrated molecular clock and independent origins for the cholera pandemic clones."
    Feng L., Reeves P.R., Lan R., Ren Y., Gao C., Zhou Z., Ren Y., Cheng J., Wang W., Wang J., Qian W., Li D., Wang L.
    PLoS ONE 3:E4053-E4053(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 39541 / Classical Ogawa 395 / O395 and O395Imported.

Entry informationi

Entry nameiA5EYX2_VIBC3
AccessioniPrimary (citable) accession number: A5EYX2
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: September 3, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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