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A5EQ03 (A5EQ03_BRASB) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module EMBL ABQ38247.1
EC=6.5.1.1 EMBL ABQ38247.1
Gene names
Ordered Locus Names:BBta_6329 EMBL ABQ38247.1
OrganismBradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) [Complete proteome] [HAMAP] EMBL ABQ38247.1
Taxonomic identifier288000 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Bradyrhizobium

Protein attributes

Sequence length895 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABQ38247.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A5EQ03 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: 674F9F0B56BC8A8B

FASTA89598,321
        10         20         30         40         50         60 
MALKKLSTYR KKRDFEKTAE PSGDAKVAPA PRPRFVIQKH DATRLHYDLR LEFGGVFKSW 

        70         80         90        100        110        120 
AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPEGEYGG GTVMLWDRGY WDSEDPERGF 

       130        140        150        160        170        180 
EKGDLKFTLD GEKLHGSWVL VRMRNDRTGG KRTNWLLIKH RDEFAREGAA NDILEADRSV 

       190        200        210        220        230        240 
ASGRTMAQIA AGKGRAPKPF MLGKTKRMNA DAVWHSNRSD SKASPARKLA PKSKPAKVAG 

       250        260        270        280        290        300 
RPKQAAPRSV ASLPDFVPPE LCTSVAQPPS GEGWAHEIKF DGYRVQIRVE DGRATLKTRK 

       310        320        330        340        350        360 
GLDWTAKFGA IAEEAGKLPD AIIDGEIVAL EQDGNPNFSA LQAAISAGQT DELIFFAFDL 

       370        380        390        400        410        420 
MFVDEFDLRR QPLRERKARL AKLLKASIKG KTPRIRYVEH FESDGEAVLE SVRKLKLEGI 

       430        440        450        460        470        480 
VSKKLDSAYH SGRTESWTKA KTRPGHEVVI GGWKTTNGKF RSLMVGVTQD DHLAYVGIVG 

       490        500        510        520        530        540 
TGFGQDTVKE IMPALQAAAA DKSPFGGKNA PRKARDVHWV KPELVAEIEF AGFTGDGNVR 

       550        560        570        580        590        600 
QASFKGLRQD KPAREVVAEQ PVVARKVTKP VARAAATVAT GGATVHKTPS RSKSSATVMG 

       610        620        630        640        650        660 
VAISKPDKAL WPDAGDGELV TKLDLANYLA AVGDWMIVHL KGRPCSIVRA PDGIAGETFF 

       670        680        690        700        710        720 
QRHGMQGMSD LLELVKVSGD RKPYLQIDRV EGLIAVAQVA AVELHPWNCA PDAYDVPGRL 

       730        740        750        760        770        780 
VFDLDPAPNV AFEAVMAAAK EMRQRLESLG LESFCKTTGG KGLHVVVPLR HGARDRVTWP 

       790        800        810        820        830        840 
EAKAFAQGVC QWMANDSPDD YLLNMSKKLR KGKIFLDYLR NDRMSTAVAV LSPRAREGAT 

       850        860        870        880        890 
VSMPVTWAQV KNGLDPKRYT VRTVPALLAK TKAWEGYDDA ARSIKPAIKK LTDKL

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000494 Genomic DNA. Translation: ABQ38247.1.
RefSeqYP_001242153.1. NC_009485.1.

3D structure databases

ProteinModelPortalA5EQ03.
ModBaseSearch...

Protein-protein interaction databases

STRING288000.BBta_6329.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABQ38247; ABQ38247; BBta_6329.
GeneID5152645.
KEGGbbt:BBta_6329.
PATRIC21213349. VBIBraSp29847_6329.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMAMANDRER.
ProtClustDBPRK05972.

Enzyme and pathway databases

BioCycBSP288000:GJBR-6069-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA5EQ03_BRASB
AccessionPrimary (citable) accession number: A5EQ03
Entry history
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: May 1, 2013
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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