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A5EQ03

- A5EQ03_BRASB

UniProt

A5EQ03 - A5EQ03_BRASB

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Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene
BBta_6329
Organism
Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBSP288000:GJBR-6069-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:BBta_6329Imported
OrganismiBradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)Imported
Taxonomic identifieri288000 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
ProteomesiUP000000246: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi288000.BBta_6329.

Structurei

3D structure databases

ProteinModelPortaliA5EQ03.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiRTETWAK.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5EQ03-1 [UniParc]FASTAAdd to Basket

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MALKKLSTYR KKRDFEKTAE PSGDAKVAPA PRPRFVIQKH DATRLHYDLR    50
LEFGGVFKSW AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPEGEYGG 100
GTVMLWDRGY WDSEDPERGF EKGDLKFTLD GEKLHGSWVL VRMRNDRTGG 150
KRTNWLLIKH RDEFAREGAA NDILEADRSV ASGRTMAQIA AGKGRAPKPF 200
MLGKTKRMNA DAVWHSNRSD SKASPARKLA PKSKPAKVAG RPKQAAPRSV 250
ASLPDFVPPE LCTSVAQPPS GEGWAHEIKF DGYRVQIRVE DGRATLKTRK 300
GLDWTAKFGA IAEEAGKLPD AIIDGEIVAL EQDGNPNFSA LQAAISAGQT 350
DELIFFAFDL MFVDEFDLRR QPLRERKARL AKLLKASIKG KTPRIRYVEH 400
FESDGEAVLE SVRKLKLEGI VSKKLDSAYH SGRTESWTKA KTRPGHEVVI 450
GGWKTTNGKF RSLMVGVTQD DHLAYVGIVG TGFGQDTVKE IMPALQAAAA 500
DKSPFGGKNA PRKARDVHWV KPELVAEIEF AGFTGDGNVR QASFKGLRQD 550
KPAREVVAEQ PVVARKVTKP VARAAATVAT GGATVHKTPS RSKSSATVMG 600
VAISKPDKAL WPDAGDGELV TKLDLANYLA AVGDWMIVHL KGRPCSIVRA 650
PDGIAGETFF QRHGMQGMSD LLELVKVSGD RKPYLQIDRV EGLIAVAQVA 700
AVELHPWNCA PDAYDVPGRL VFDLDPAPNV AFEAVMAAAK EMRQRLESLG 750
LESFCKTTGG KGLHVVVPLR HGARDRVTWP EAKAFAQGVC QWMANDSPDD 800
YLLNMSKKLR KGKIFLDYLR NDRMSTAVAV LSPRAREGAT VSMPVTWAQV 850
KNGLDPKRYT VRTVPALLAK TKAWEGYDDA ARSIKPAIKK LTDKL 895
Length:895
Mass (Da):98,321
Last modified:June 12, 2007 - v1
Checksum:i674F9F0B56BC8A8B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000494 Genomic DNA. Translation: ABQ38247.1.
RefSeqiWP_012046192.1. NC_009485.1.
YP_001242153.1. NC_009485.1.

Genome annotation databases

EnsemblBacteriaiABQ38247; ABQ38247; BBta_6329.
GeneIDi5152645.
KEGGibbt:BBta_6329.
PATRICi21213349. VBIBraSp29847_6329.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000494 Genomic DNA. Translation: ABQ38247.1 .
RefSeqi WP_012046192.1. NC_009485.1.
YP_001242153.1. NC_009485.1.

3D structure databases

ProteinModelPortali A5EQ03.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 288000.BBta_6329.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABQ38247 ; ABQ38247 ; BBta_6329 .
GeneIDi 5152645.
KEGGi bbt:BBta_6329.
PATRICi 21213349. VBIBraSp29847_6329.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi RTETWAK.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BSP288000:GJBR-6069-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BTAi1 / ATCC BAA-1182.

Entry informationi

Entry nameiA5EQ03_BRASB
AccessioniPrimary (citable) accession number: A5EQ03
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: September 3, 2014
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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