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A5EQ03

- A5EQ03_BRASB

UniProt

A5EQ03 - A5EQ03_BRASB

Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

BBta_6329

Organism
Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 48 (01 Oct 2014)
      Sequence version 1 (12 Jun 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBSP288000:GJBR-6069-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:BBta_6329Imported
    OrganismiBradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)Imported
    Taxonomic identifieri288000 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
    ProteomesiUP000000246: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi288000.BBta_6329.

    Structurei

    3D structure databases

    ProteinModelPortaliA5EQ03.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiRTETWAK.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A5EQ03-1 [UniParc]FASTAAdd to Basket

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    MALKKLSTYR KKRDFEKTAE PSGDAKVAPA PRPRFVIQKH DATRLHYDLR    50
    LEFGGVFKSW AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPEGEYGG 100
    GTVMLWDRGY WDSEDPERGF EKGDLKFTLD GEKLHGSWVL VRMRNDRTGG 150
    KRTNWLLIKH RDEFAREGAA NDILEADRSV ASGRTMAQIA AGKGRAPKPF 200
    MLGKTKRMNA DAVWHSNRSD SKASPARKLA PKSKPAKVAG RPKQAAPRSV 250
    ASLPDFVPPE LCTSVAQPPS GEGWAHEIKF DGYRVQIRVE DGRATLKTRK 300
    GLDWTAKFGA IAEEAGKLPD AIIDGEIVAL EQDGNPNFSA LQAAISAGQT 350
    DELIFFAFDL MFVDEFDLRR QPLRERKARL AKLLKASIKG KTPRIRYVEH 400
    FESDGEAVLE SVRKLKLEGI VSKKLDSAYH SGRTESWTKA KTRPGHEVVI 450
    GGWKTTNGKF RSLMVGVTQD DHLAYVGIVG TGFGQDTVKE IMPALQAAAA 500
    DKSPFGGKNA PRKARDVHWV KPELVAEIEF AGFTGDGNVR QASFKGLRQD 550
    KPAREVVAEQ PVVARKVTKP VARAAATVAT GGATVHKTPS RSKSSATVMG 600
    VAISKPDKAL WPDAGDGELV TKLDLANYLA AVGDWMIVHL KGRPCSIVRA 650
    PDGIAGETFF QRHGMQGMSD LLELVKVSGD RKPYLQIDRV EGLIAVAQVA 700
    AVELHPWNCA PDAYDVPGRL VFDLDPAPNV AFEAVMAAAK EMRQRLESLG 750
    LESFCKTTGG KGLHVVVPLR HGARDRVTWP EAKAFAQGVC QWMANDSPDD 800
    YLLNMSKKLR KGKIFLDYLR NDRMSTAVAV LSPRAREGAT VSMPVTWAQV 850
    KNGLDPKRYT VRTVPALLAK TKAWEGYDDA ARSIKPAIKK LTDKL 895
    Length:895
    Mass (Da):98,321
    Last modified:June 12, 2007 - v1
    Checksum:i674F9F0B56BC8A8B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000494 Genomic DNA. Translation: ABQ38247.1.
    RefSeqiWP_012046192.1. NC_009485.1.
    YP_001242153.1. NC_009485.1.

    Genome annotation databases

    EnsemblBacteriaiABQ38247; ABQ38247; BBta_6329.
    GeneIDi5152645.
    KEGGibbt:BBta_6329.
    PATRICi21213349. VBIBraSp29847_6329.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000494 Genomic DNA. Translation: ABQ38247.1 .
    RefSeqi WP_012046192.1. NC_009485.1.
    YP_001242153.1. NC_009485.1.

    3D structure databases

    ProteinModelPortali A5EQ03.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 288000.BBta_6329.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABQ38247 ; ABQ38247 ; BBta_6329 .
    GeneIDi 5152645.
    KEGGi bbt:BBta_6329.
    PATRICi 21213349. VBIBraSp29847_6329.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi RTETWAK.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci BSP288000:GJBR-6069-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BTAi1 / ATCC BAA-1182Imported.

    Entry informationi

    Entry nameiA5EQ03_BRASB
    AccessioniPrimary (citable) accession number: A5EQ03
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 12, 2007
    Last sequence update: June 12, 2007
    Last modified: October 1, 2014
    This is version 48 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3