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Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

BBta_6329

Organism
Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBSP288000:GJBR-6069-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:BBta_6329Imported
OrganismiBradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)Imported
Taxonomic identifieri288000 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
ProteomesiUP000000246 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi288000.BBta_6329.

Structurei

3D structure databases

ProteinModelPortaliA5EQ03.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiMISSPDK.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5EQ03-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALKKLSTYR KKRDFEKTAE PSGDAKVAPA PRPRFVIQKH DATRLHYDLR
60 70 80 90 100
LEFGGVFKSW AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPEGEYGG
110 120 130 140 150
GTVMLWDRGY WDSEDPERGF EKGDLKFTLD GEKLHGSWVL VRMRNDRTGG
160 170 180 190 200
KRTNWLLIKH RDEFAREGAA NDILEADRSV ASGRTMAQIA AGKGRAPKPF
210 220 230 240 250
MLGKTKRMNA DAVWHSNRSD SKASPARKLA PKSKPAKVAG RPKQAAPRSV
260 270 280 290 300
ASLPDFVPPE LCTSVAQPPS GEGWAHEIKF DGYRVQIRVE DGRATLKTRK
310 320 330 340 350
GLDWTAKFGA IAEEAGKLPD AIIDGEIVAL EQDGNPNFSA LQAAISAGQT
360 370 380 390 400
DELIFFAFDL MFVDEFDLRR QPLRERKARL AKLLKASIKG KTPRIRYVEH
410 420 430 440 450
FESDGEAVLE SVRKLKLEGI VSKKLDSAYH SGRTESWTKA KTRPGHEVVI
460 470 480 490 500
GGWKTTNGKF RSLMVGVTQD DHLAYVGIVG TGFGQDTVKE IMPALQAAAA
510 520 530 540 550
DKSPFGGKNA PRKARDVHWV KPELVAEIEF AGFTGDGNVR QASFKGLRQD
560 570 580 590 600
KPAREVVAEQ PVVARKVTKP VARAAATVAT GGATVHKTPS RSKSSATVMG
610 620 630 640 650
VAISKPDKAL WPDAGDGELV TKLDLANYLA AVGDWMIVHL KGRPCSIVRA
660 670 680 690 700
PDGIAGETFF QRHGMQGMSD LLELVKVSGD RKPYLQIDRV EGLIAVAQVA
710 720 730 740 750
AVELHPWNCA PDAYDVPGRL VFDLDPAPNV AFEAVMAAAK EMRQRLESLG
760 770 780 790 800
LESFCKTTGG KGLHVVVPLR HGARDRVTWP EAKAFAQGVC QWMANDSPDD
810 820 830 840 850
YLLNMSKKLR KGKIFLDYLR NDRMSTAVAV LSPRAREGAT VSMPVTWAQV
860 870 880 890
KNGLDPKRYT VRTVPALLAK TKAWEGYDDA ARSIKPAIKK LTDKL
Length:895
Mass (Da):98,321
Last modified:June 11, 2007 - v1
Checksum:i674F9F0B56BC8A8B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000494 Genomic DNA. Translation: ABQ38247.1.
RefSeqiWP_012046192.1. NC_009485.1.
YP_001242153.1. NC_009485.1.

Genome annotation databases

EnsemblBacteriaiABQ38247; ABQ38247; BBta_6329.
KEGGibbt:BBta_6329.
PATRICi21213349. VBIBraSp29847_6329.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000494 Genomic DNA. Translation: ABQ38247.1.
RefSeqiWP_012046192.1. NC_009485.1.
YP_001242153.1. NC_009485.1.

3D structure databases

ProteinModelPortaliA5EQ03.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi288000.BBta_6329.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABQ38247; ABQ38247; BBta_6329.
KEGGibbt:BBta_6329.
PATRICi21213349. VBIBraSp29847_6329.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiMISSPDK.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciBSP288000:GJBR-6069-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BTAi1 / ATCC BAA-1182Imported.

Entry informationi

Entry nameiA5EQ03_BRASB
AccessioniPrimary (citable) accession number: A5EQ03
Entry historyi
Integrated into UniProtKB/TrEMBL: June 11, 2007
Last sequence update: June 11, 2007
Last modified: March 31, 2015
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.