A5EDE1 (A5EDE1_BRASB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Uptake hydrogenase accessory EMBL ABQ34185.1
EC=1.12.99.6 EMBL ABQ34185.1

Gene names

Name:	hupU EMBL ABQ34185.1
Ordered Locus Names:	BBta_1994 EMBL ABQ34185.1

Organism

Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) [Complete proteome] [HAMAP] EMBL ABQ34185.1

Taxonomic identifier

288000 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Bradyrhizobium

Protein attributes

Sequence length	338 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor

Binds 1 3Fe-4S cluster By similarity. PIRSR PIRSR000310-1 Binds 2 4Fe-4S clusters By similarity. PIRSR PIRSR000310-1

Ontologies

Keywords
Ligand	3Fe-4S PIRSR PIRSR000310-1 4Fe-4S PIRSR PIRSR000310-1 Iron Iron-sulfur Metal-binding
Molecular function	Oxidoreductase EMBL ABQ34185.1
Technical term	Complete proteome
Gene Ontology (GO)
Cellular_component	ferredoxin hydrogenase complex Inferred from electronic annotation. Source: InterPro
Molecular_function	3 iron, 4 sulfur cluster binding Inferred from electronic annotation. Source: UniProtKB-KW 4 iron, 4 sulfur cluster binding Inferred from electronic annotation. Source: UniProtKB-KW NADH dehydrogenase (ubiquinone) activity Inferred from electronic annotation. Source: InterPro ferredoxin hydrogenase activity Inferred from electronic annotation. Source: InterPro hydrogenase (acceptor) activity Inferred from electronic annotation. Source: EC metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW quinone binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Metal binding	18	1	Iron-sulfur 1 (4Fe-4S) By similarity PIRSR PIRSR000310-1
	Metal binding	21	1	Iron-sulfur 1 (4Fe-4S) By similarity PIRSR PIRSR000310-1
	Metal binding	121	1	Iron-sulfur 1 (4Fe-4S) By similarity PIRSR PIRSR000310-1
	Metal binding	169	1	Iron-sulfur 1 (4Fe-4S) By similarity PIRSR PIRSR000310-1
	Metal binding	208	1	Iron-sulfur 2 (4Fe-4S); via pros nitrogen By similarity PIRSR PIRSR000310-1
	Metal binding	211	1	Iron-sulfur 2 (4Fe-4S) By similarity PIRSR PIRSR000310-1
	Metal binding	231	1	Iron-sulfur 2 (4Fe-4S) By similarity PIRSR PIRSR000310-1
	Metal binding	238	1	Iron-sulfur 2 (4Fe-4S) By similarity PIRSR PIRSR000310-1
	Metal binding	247	1	Iron-sulfur 3 (3Fe-4S) By similarity PIRSR PIRSR000310-1
	Metal binding	265	1	Iron-sulfur 3 (3Fe-4S) By similarity PIRSR PIRSR000310-1
	Metal binding	268	1	Iron-sulfur 3 (3Fe-4S) By similarity PIRSR PIRSR000310-1

Sequences

	Sequence		Length	Mass (Da)
	A5EDE1 [UniParc]. Last modified June 12, 2007. Version 1. Checksum: 236416E5DF6AEC27	FASTA	338	35,382
	10 20 30 40 50 60 MVGAEGMTRM LWLQGASCGG CTMSILESGA SGWFDELRQS GIDLVWHPSV SEETGEEAAE 70 80 90 100 110 120 LLEAIRDGRE RLDLLVLEGS VARGPNLSGR FNMLAGTNRS IYHWLLDLAP LADYVVAVGS 130 140 150 160 170 180 CAAYGGIPAA GINPTDAVGL QFEGSDVGGA LGAGFRSKRG LPVINVAGCA PHPGWIMESL 190 200 210 220 230 240 LALTTGDLTA DGLDAVGRPA FIANHLAHHG CSRNEFYEFK ASAEAMSERG CLMEHLGCRA 250 260 270 280 290 300 TQAVGDCNQR SWNGGGSCTK GGYACIACTS PGFESAQNYL QTAKLAGIPV GLPTDMPKAW 310 320 330 FVALAALSKS ATPRRVRVNA TADHVVVPPS RSGDKRSS

References

[1]

"Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia." Giraud E., Moulin L., Vallenet D., Barbe V., Cytryn E., Avarre J.C., Jaubert M., Simon D., Cartieaux F., Prin Y., Bena G., Hannibal L., Fardoux J., Kojadinovic M., Vuillet L., Lajus A., Cruveiller S., Rouy Z. , Mangenot S., Segurens B., Dossat C., Franck W.L., Chang W.S., Saunders E., Bruce D., Richardson P., Normand P., Dreyfus B., Pignol D., Stacey G., Emerich D., Vermeglio A., Medigue C., Sadowsky M. Science 316:1307-1312(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BTAi1 / ATCC BAA-1182.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000494 Genomic DNA. Translation: ABQ34185.1.
RefSeq	YP_001238091.1. NC_009485.1.
3D structure databases
ProteinModelPortal	A5EDE1.
ModBase	Search...
Protein-protein interaction databases
STRING	288000.BBta_1994.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABQ34185; ABQ34185; BBta_1994.
GeneID	5152128.
KEGG	bbt:BBta_1994.
PATRIC	21204863. VBIBraSp29847_2116.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1740.
HOGENOM	HOG000008258.
KO	K00534.
OMA	AGCPTHP.
ProtClustDB	CLSK911649.
Enzyme and pathway databases
BioCyc	BSP288000:GJBR-1911-MONOMER.
Family and domain databases
Gene3D	3.40.50.700. 1 hit.
InterPro	IPR006137. NADH_UbQ_OxRdtase-like_20kDa. IPR001821. NiFe_hydrogenase_ssu. [Graphical view]
Pfam	PF01058. Oxidored_q6. 1 hit. [Graphical view]
PIRSF	PIRSF000310. NiFe_hyd_ssu. 1 hit.
PRINTS	PR00614. NIHGNASESMLL.
ProtoNet	Search...

Entry information

Entry name

A5EDE1_BRASB

Accession

Primary (citable) accession number: A5EDE1

Entry history

Integrated into UniProtKB/TrEMBL:	June 12, 2007
Last sequence update:	June 12, 2007
Last modified:	May 1, 2013
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)