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Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

BBta_0092

Organism
Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:BBta_0092Imported
OrganismiBradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)Imported
Taxonomic identifieri288000 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
Proteomesi
  • UP000000246 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi288000.BBta_0092.

Structurei

3D structure databases

ProteinModelPortaliA5E899.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini12 – 192DNA_LIGASE_A3InterPro annotationAdd BLAST181
Domaini215 – 315DNA_ligase_A_CInterPro annotationAdd BLAST101

Phylogenomic databases

eggNOGiENOG4105GN4. Bacteria.
COG1793. LUCA.
HOGENOMiHOG000222508.
OMAiKPMTRYF.
OrthoDBiPOG091H08HZ.

Family and domain databases

InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

A5E899-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEARSVDAIP RGHEWQYEPK WDGFRCLLAR HGADVTMQSK AGEDLARYFP
60 70 80 90 100
EVAAAARALK ATRFTLDGEL VVPQAKSFSF DALLQRIHPA ASRVKKLSVE
110 120 130 140 150
TPALFLAFDL LATAKDAELM ARPLHARRLA LEAFAKANFT DHPTFRLSPA
160 170 180 190 200
TTRFATAQDW LAQSGGGSDG VIAKRIDLPY QAGNRDGMQK IKRHRSADCV
210 220 230 240 250
IGGFRYATNK GAQGRKLVGS LLLGLYDDDG LLHHVGFTSA LKKEEKPALT
260 270 280 290 300
DKLEPLIAPP GFTGNAPGGP SRWSTARSTE WCPLKPKLVI EVCYDHFSGD
310 320 330
RFRHGTSILR WRPDKSPRQC TFEQLKQTIA DPLKLLA
Length:337
Mass (Da):37,259
Last modified:June 12, 2007 - v1
Checksum:i328FAD5BDD4A7ABD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000494 Genomic DNA. Translation: ABQ32393.1.
RefSeqiWP_011942616.1. NC_009485.1.

Genome annotation databases

EnsemblBacteriaiABQ32393; ABQ32393; BBta_0092.
KEGGibbt:BBta_0092.
PATRICi21201184. VBIBraSp29847_0297.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000494 Genomic DNA. Translation: ABQ32393.1.
RefSeqiWP_011942616.1. NC_009485.1.

3D structure databases

ProteinModelPortaliA5E899.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi288000.BBta_0092.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABQ32393; ABQ32393; BBta_0092.
KEGGibbt:BBta_0092.
PATRICi21201184. VBIBraSp29847_0297.

Phylogenomic databases

eggNOGiENOG4105GN4. Bacteria.
COG1793. LUCA.
HOGENOMiHOG000222508.
OMAiKPMTRYF.
OrthoDBiPOG091H08HZ.

Family and domain databases

InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiA5E899_BRASB
AccessioniPrimary (citable) accession number: A5E899
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: November 2, 2016
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.