A5DZ49 (A5DZ49_LODEL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Pre-mRNA splicing factor ATP-dependent RNA helicase PRP2 EMBL EDK44457.1

Gene names

ORF Names:

LELG_02636 EMBL EDK44457.1

Organism

Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) (Yeast) (Saccharomyces elongisporus) [Complete proteome] EMBL EDK44457.1

Taxonomic identifier

379508 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Fungi › Dikarya › Ascomycota › saccharomyceta › Saccharomycotina › Saccharomycetes › Saccharomycetales › Debaryomycetaceae › Lodderomyces › Lodderomyces elongisporus

Protein attributes

Sequence length	900 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 helicase ATP-binding domain. SAAS SAAS007502 Contains 1 helicase C-terminal domain. SAAS SAAS007502

Ontologies

Keywords
Ligand	ATP-binding Nucleotide-binding
Molecular function	Helicase EMBL EDK44457.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ATP-dependent helicase activity Inferred from electronic annotation. Source: InterPro nucleic acid binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5DZ49 [UniParc]. Last modified June 12, 2007. Version 1. Checksum: B2471C0C181FB2BC	FASTA	900	104,202
	10 20 30 40 50 60 MSNNSSKQSG EGYSRRSHDI DYDDLDGDKF PQEVEEQPKQ EPSSKEHTTN STSNETYLSQ 70 80 90 100 110 120 HNSENDNNSN YNNNNNNNYN NNYNNNYNNN YKYNNNNNNN NNSNNNKNKY CRNSNGNNAH 130 140 150 160 170 180 HRQPQSRNSQ IYRKRLRASY EEQLQLEIEE LESRYDLRPA DQSRLEQLQA QLEATYSRQS 190 200 210 220 230 240 SGYSLPEVAQ SKSDLLHGRG NSQRNQLDQH QQHQQQTYRT ENWEAEQFNR AQLLNLQTDD 250 260 270 280 290 300 KIHINNDKQY EYVFDESQFV NYEEDEELSG DEREEQQQQQ QQQQQQQQQQ QQPEEEEEDE 310 320 330 340 350 360 AERKKQFQRS LEAKEIADVQ HSLPVYKFRD EFLRLISENQ VLIVVGETGS GKTTQLPQYL 370 380 390 400 410 420 YQAGYSQNDT KIIGCTQPRR VAATSVAQRV AQEMQEPLGE KVGYTVRFDD KSSRNTRIKY 430 440 450 460 470 480 LTDGMLLREF LNNPEMDSYG AIMIDEAHER TLSTEILLSL LKDLTNSTRS DLKIIIASAT 490 500 510 520 530 540 INATKFSEFF NNAPILNIPG RRFPVKIHYT KQPEANYLQA VMTTIFQIHL TQPLPGDILV 550 560 570 580 590 600 FLTGQEEIES LEQQMQEAIA KLGDQLKEQG KIMVCSIYAN LPNEQQQRIF EPTPPFTRKL 610 620 630 640 650 660 VLATNIAETS ITIPGVSYVI DPGYVKQTEF NPHTGMESLL VVPCSKANCD QRAGRAGRIG 670 680 690 700 710 720 PGKCFRIFTK HSFDHEMEMN TKPEIERINL NSVVLLLLSL GINDLIKFPF LDPPNRQSII 730 740 750 760 770 780 KSLSLLYQLG GLNSRGELTR TGMKMSEFPL DPTYAKCILS SERFGITKEI CIIIAMLTES 790 800 810 820 830 840 SNLYYIPKKL DKEMVKKRHE QFVDKQGDHL TLLNVYKQWA GTGGYSNQWC QDYFIQYKTM 850 860 870 880 890 900 KRVRDIYKQL IGICLKVGIT VREEQKEEQE EGEKRKERDD GDVMAQFGSK VFDYWVLSII

References

[1]

"Evolution of pathogenicity and sexual reproduction in eight Candida genomes." Butler G., Rasmussen M.D., Lin M.F., Santos M.A.S., Sakthikumar S., Munro C.A., Rheinbay E., Grabherr M., Forche A., Reedy J.L., Agrafioti I., Arnaud M.B., Bates S., Brown A.J.P., Brunke S., Costanzo M.C., Fitzpatrick D.A., de Groot P.W.J. , Harris D., Hoyer L.L., Hube B., Klis F.M., Kodira C., Lennard N., Logue M.E., Martin R., Neiman A.M., Nikolaou E., Quail M.A., Quinn J., Santos M.C., Schmitzberger F.F., Sherlock G., Shah P., Silverstein K.A.T., Skrzypek M.S., Soll D., Staggs R., Stansfield I., Stumpf M.P.H., Sudbery P.E., Srikantha T., Zeng Q., Berman J., Berriman M., Heitman J., Gow N.A.R., Lorenz M.C., Birren B.W., Kellis M., Cuomo C.A. Nature 459:657-662(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CH981526 Genomic DNA. Translation: EDK44457.1.
RefSeq	XP_001526078.1. XM_001526028.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5233561.
KEGG	lel:LELG_02636.
Phylogenomic databases
KO	K12814.
OMA	DDKIHIN.
OrthoDB	EOG4SBJ63.
Family and domain databases
InterPro	IPR003593. AAA+_ATPase. IPR002464. DNA/RNA_helicase_DEAH_CS. IPR007502. Helicase-assoc_dom. IPR014001. Helicase_ATP-bd. IPR001650. Helicase_C. IPR027417. P-loop_NTPase. [Graphical view]
Pfam	PF04408. HA2. 1 hit. PF00271. Helicase_C. 1 hit. [Graphical view]
SMART	SM00382. AAA. 1 hit. SM00487. DEXDc. 1 hit. SM00847. HA2. 1 hit. SM00490. HELICc. 1 hit. [Graphical view]
SUPFAM	SSF52540. SSF52540. 1 hit.
PROSITE	PS00690. DEAH_ATP_HELICASE. 1 hit. PS51192. HELICASE_ATP_BIND_1. 1 hit. PS51194. HELICASE_CTER. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5DZ49_LODEL

Accession

Primary (citable) accession number: A5DZ49

Entry history

Integrated into UniProtKB/TrEMBL:	June 12, 2007
Last sequence update:	June 12, 2007
Last modified:	May 29, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)