A5DVF8 (RS3A_LODEL) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
40S ribosomal protein S1

Gene names

Name:	RPS1
ORF Names:	LELG_01344

Organism

Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) (Yeast) (Saccharomyces elongisporus) [Complete proteome]

Taxonomic identifier

379508 [NCBI]

Taxonomic lineage

Eukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › Debaryomycetaceae › Lodderomyces

Protein attributes

Sequence length	242 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Subunit structure	Component of the small ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains about 33 different proteins and 1 molecule of RNA (18S). The 60S subunit contains about 49 different proteins and 3 molecules of RNA (25S, 5.8S and 5S) By similarity.
Subcellular location	Cytoplasm By similarity.
Sequence similarities	Belongs to the ribosomal protein S3Ae family.

Ontologies

Keywords
Cellular component	Cytoplasm
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 242	242	40S ribosomal protein S1		PRO_0000389383

Sequences

	Sequence		Length	Mass (Da)
	A5DVF8 [UniParc]. Last modified June 12, 2007. Version 1. Checksum: F5FAF7D608CE06F0	FASTA	242	27,303
	10 20 30 40 50 60 MTNKGKKKVN PFDRKQFYDI QAPSTFTNTY VGKTLVNKSA GTFSSTDALK GRVFEVNLGD 70 80 90 100 110 120 LTLEDNAYRK VKLRADEVQG NKILTNFHGM DFTSDKLRSL VRKWQSLVEA NVTVKTADDY 130 140 150 160 170 180 VLRVFAIAFT KRQANQVKKT TYAQSSKLRE VRKKMVEILT REVSNSTLSQ LTSKLIPEVI 190 200 210 220 230 240 SREIEKSTQT IFPLQNVHIR KVKLLKQPKF DLGSLLALHG EASEEKGKKV AGGFKDVVLE SV

References

[1]

"Evolution of pathogenicity and sexual reproduction in eight Candida genomes." Butler G., Rasmussen M.D., Lin M.F., Santos M.A.S., Sakthikumar S., Munro C.A., Rheinbay E., Grabherr M., Forche A., Reedy J.L., Agrafioti I., Arnaud M.B., Bates S., Brown A.J.P., Brunke S., Costanzo M.C., Fitzpatrick D.A., de Groot P.W.J. , Harris D., Hoyer L.L., Hube B., Klis F.M., Kodira C., Lennard N., Logue M.E., Martin R., Neiman A.M., Nikolaou E., Quail M.A., Quinn J., Santos M.C., Schmitzberger F.F., Sherlock G., Shah P., Silverstein K.A.T., Skrzypek M.S., Soll D., Staggs R., Stansfield I., Stumpf M.P.H., Sudbery P.E., Srikantha T., Zeng Q., Berman J., Berriman M., Heitman J., Gow N.A.R., Lorenz M.C., Birren B.W., Kellis M., Cuomo C.A. Nature 459:657-662(2009) [PubMed: 19465905] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CH981525 Genomic DNA. Translation: EDK43166.1.
RefSeq	XP_001526516.1. XM_001526466.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	A5DVF8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5234660.
KEGG	lel:LELG_01344.
Phylogenomic databases
OMA	GHDTTRE.
OrthoDB	EOG4WM83S.
Family and domain databases
InterPro	IPR001593. Ribosomal_S3Ae. [Graphical view]
KO	K02984.
PANTHER	PTHR11830. Ribosomal_S3AE. 1 hit.
Pfam	PF01015. Ribosomal_S3Ae. 1 hit. [Graphical view]
PROSITE	PS01191. RIBOSOMAL_S3AE. False negative. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RS3A_LODEL

Accession

Primary (citable) accession number: A5DVF8

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 24, 2009
Last sequence update:	June 12, 2007
Last modified:	November 16, 2011
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Fungal Protein Annotation Program