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A5D2W1 (A5D2W1_PELTS) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:CDC9 EMBL BAF59424.1
Ordered Locus Names:PTH_1243 EMBL BAF59424.1
OrganismPelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) [Complete proteome] [HAMAP] EMBL BAF59424.1
Taxonomic identifier370438 [NCBI]
Taxonomic lineageBacteriaFirmicutesClostridiaClostridialesPeptococcaceaePelotomaculum

Protein attributes

Sequence length324 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL BAF59424.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A5D2W1 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: DE476C3589D406F5

FASTA32435,801
        10         20         30         40         50         60 
MSDGSLPLLR PMLAVSSRPF DSAEYIYEVK WDGYRGLCYL DGNTVIRSRN LADLTGKFPE 

        70         80         90        100        110        120 
LAGMHRKVSR KPAILDGEIV LFEKGKPSFA GLQSRGKISE LKSISRASAE RPVIFIAFDV 

       130        140        150        160        170        180 
LYCGGKSVMG LSLIERKRLL EEMVGTGEEL VLSRYICGEG RKFFEACVKE GLEGAVAKKL 

       190        200        210        220        230        240 
NSVYLPGRRS AYWLKFRHTK EADLVICGYQ YGPGGKNLGC LVLGGYHNGR LVYQGKVGTG 

       250        260        270        280        290        300 
FSSEEANALL EGLRRLEVAG ETLQVPRAEK SRTRWVRPLL VCAVEYLEAT AGGCLRHPVY 

       310        320 
RGLRRDKTPA ECPAVAIKVW LDGT 

« Hide

References

[1]"The genome of Pelotomaculum thermopropionicum reveals niche-associated evolution in anaerobic microbiota."
Kosaka T., Kato S., Shimoyama T., Ishii S., Abe T., Watanabe K.
Genome Res. 18:442-448(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 13744 / JCM 10971 / SI.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP009389 Genomic DNA. Translation: BAF59424.1.
RefSeqYP_001211793.1. NC_009454.1.

3D structure databases

ProteinModelPortalA5D2W1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING370438.PTH_1243.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAF59424; BAF59424; PTH_1243.
GeneID5137942.
KEGGpth:PTH_1243.
PATRIC22909603. VBIPelThe8413_1399.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000222509.
KOK01971.
OMAVEVKYGQ.
OrthoDBEOG6BW4VZ.
ProtClustDBCLSK862724.

Enzyme and pathway databases

BioCycPTHE370438:GCGQ-1287-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA5D2W1_PELTS
AccessionPrimary (citable) accession number: A5D2W1
Entry history
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: April 16, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)