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A5D2W1

- A5D2W1_PELTS

UniProt

A5D2W1 - A5D2W1_PELTS

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

CDC9

Organism
Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (12 Jun 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPTHE370438:GCGQ-1287-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Name:CDC9Imported
    Ordered Locus Names:PTH_1243Imported
    OrganismiPelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI)Imported
    Taxonomic identifieri370438 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaePelotomaculum
    ProteomesiUP000006556: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi370438.PTH_1243.

    Structurei

    3D structure databases

    ProteinModelPortaliA5D2W1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiVEVKYGQ.
    OrthoDBiEOG6BW4VZ.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A5D2W1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSDGSLPLLR PMLAVSSRPF DSAEYIYEVK WDGYRGLCYL DGNTVIRSRN    50
    LADLTGKFPE LAGMHRKVSR KPAILDGEIV LFEKGKPSFA GLQSRGKISE 100
    LKSISRASAE RPVIFIAFDV LYCGGKSVMG LSLIERKRLL EEMVGTGEEL 150
    VLSRYICGEG RKFFEACVKE GLEGAVAKKL NSVYLPGRRS AYWLKFRHTK 200
    EADLVICGYQ YGPGGKNLGC LVLGGYHNGR LVYQGKVGTG FSSEEANALL 250
    EGLRRLEVAG ETLQVPRAEK SRTRWVRPLL VCAVEYLEAT AGGCLRHPVY 300
    RGLRRDKTPA ECPAVAIKVW LDGT 324
    Length:324
    Mass (Da):35,801
    Last modified:June 12, 2007 - v1
    Checksum:iDE476C3589D406F5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP009389 Genomic DNA. Translation: BAF59424.1.
    RefSeqiYP_001211793.1. NC_009454.1.

    Genome annotation databases

    EnsemblBacteriaiBAF59424; BAF59424; PTH_1243.
    GeneIDi5137942.
    KEGGipth:PTH_1243.
    PATRICi22909603. VBIPelThe8413_1399.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP009389 Genomic DNA. Translation: BAF59424.1 .
    RefSeqi YP_001211793.1. NC_009454.1.

    3D structure databases

    ProteinModelPortali A5D2W1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 370438.PTH_1243.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAF59424 ; BAF59424 ; PTH_1243 .
    GeneIDi 5137942.
    KEGGi pth:PTH_1243.
    PATRICi 22909603. VBIPelThe8413_1399.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi VEVKYGQ.
    OrthoDBi EOG6BW4VZ.

    Enzyme and pathway databases

    BioCyci PTHE370438:GCGQ-1287-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of Pelotomaculum thermopropionicum reveals niche-associated evolution in anaerobic microbiota."
      Kosaka T., Kato S., Shimoyama T., Ishii S., Abe T., Watanabe K.
      Genome Res. 18:442-448(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 13744 / JCM 10971 / SIImported.

    Entry informationi

    Entry nameiA5D2W1_PELTS
    AccessioniPrimary (citable) accession number: A5D2W1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 12, 2007
    Last sequence update: June 12, 2007
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3