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A5D2W1

- A5D2W1_PELTS

UniProt

A5D2W1 - A5D2W1_PELTS

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

CDC9

Organism
Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPTHE370438:GCGQ-1287-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:CDC9Imported
Ordered Locus Names:PTH_1243Imported
OrganismiPelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI)Imported
Taxonomic identifieri370438 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaePelotomaculum
ProteomesiUP000006556: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi370438.PTH_1243.

Structurei

3D structure databases

ProteinModelPortaliA5D2W1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
KOiK01971.
OMAiVEVKYGQ.
OrthoDBiEOG6BW4VZ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5D2W1-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MSDGSLPLLR PMLAVSSRPF DSAEYIYEVK WDGYRGLCYL DGNTVIRSRN
60 70 80 90 100
LADLTGKFPE LAGMHRKVSR KPAILDGEIV LFEKGKPSFA GLQSRGKISE
110 120 130 140 150
LKSISRASAE RPVIFIAFDV LYCGGKSVMG LSLIERKRLL EEMVGTGEEL
160 170 180 190 200
VLSRYICGEG RKFFEACVKE GLEGAVAKKL NSVYLPGRRS AYWLKFRHTK
210 220 230 240 250
EADLVICGYQ YGPGGKNLGC LVLGGYHNGR LVYQGKVGTG FSSEEANALL
260 270 280 290 300
EGLRRLEVAG ETLQVPRAEK SRTRWVRPLL VCAVEYLEAT AGGCLRHPVY
310 320
RGLRRDKTPA ECPAVAIKVW LDGT
Length:324
Mass (Da):35,801
Last modified:June 12, 2007 - v1
Checksum:iDE476C3589D406F5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP009389 Genomic DNA. Translation: BAF59424.1.
RefSeqiYP_001211793.1. NC_009454.1.

Genome annotation databases

EnsemblBacteriaiBAF59424; BAF59424; PTH_1243.
GeneIDi5137942.
KEGGipth:PTH_1243.
PATRICi22909603. VBIPelThe8413_1399.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP009389 Genomic DNA. Translation: BAF59424.1 .
RefSeqi YP_001211793.1. NC_009454.1.

3D structure databases

ProteinModelPortali A5D2W1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 370438.PTH_1243.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAF59424 ; BAF59424 ; PTH_1243 .
GeneIDi 5137942.
KEGGi pth:PTH_1243.
PATRICi 22909603. VBIPelThe8413_1399.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000222509.
KOi K01971.
OMAi VEVKYGQ.
OrthoDBi EOG6BW4VZ.

Enzyme and pathway databases

BioCyci PTHE370438:GCGQ-1287-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome of Pelotomaculum thermopropionicum reveals niche-associated evolution in anaerobic microbiota."
    Kosaka T., Kato S., Shimoyama T., Ishii S., Abe T., Watanabe K.
    Genome Res. 18:442-448(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 13744 / JCM 10971 / SIImported.

Entry informationi

Entry nameiA5D2W1_PELTS
AccessioniPrimary (citable) accession number: A5D2W1
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: October 1, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3