A5D2W1 (A5D2W1_PELTS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL BAF59424.1

Gene names

Name:	CDC9 EMBL BAF59424.1
Ordered Locus Names:	PTH_1243 EMBL BAF59424.1

Organism

Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) [Complete proteome] [HAMAP] EMBL BAF59424.1

Taxonomic identifier

370438 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Peptococcaceae › Pelotomaculum › Pelotomaculum thermopropionicum

Protein attributes

Sequence length	324 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL BAF59424.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5D2W1 [UniParc]. Last modified June 12, 2007. Version 1. Checksum: DE476C3589D406F5	FASTA	324	35,801
	10 20 30 40 50 60 MSDGSLPLLR PMLAVSSRPF DSAEYIYEVK WDGYRGLCYL DGNTVIRSRN LADLTGKFPE 70 80 90 100 110 120 LAGMHRKVSR KPAILDGEIV LFEKGKPSFA GLQSRGKISE LKSISRASAE RPVIFIAFDV 130 140 150 160 170 180 LYCGGKSVMG LSLIERKRLL EEMVGTGEEL VLSRYICGEG RKFFEACVKE GLEGAVAKKL 190 200 210 220 230 240 NSVYLPGRRS AYWLKFRHTK EADLVICGYQ YGPGGKNLGC LVLGGYHNGR LVYQGKVGTG 250 260 270 280 290 300 FSSEEANALL EGLRRLEVAG ETLQVPRAEK SRTRWVRPLL VCAVEYLEAT AGGCLRHPVY 310 320 RGLRRDKTPA ECPAVAIKVW LDGT

References

[1]

"The genome of Pelotomaculum thermopropionicum reveals niche-associated evolution in anaerobic microbiota." Kosaka T., Kato S., Shimoyama T., Ishii S., Abe T., Watanabe K. Genome Res. 18:442-448(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 13744 / JCM 10971 / SI.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP009389 Genomic DNA. Translation: BAF59424.1.
RefSeq	YP_001211793.1. NC_009454.1.
3D structure databases
ProteinModelPortal	A5D2W1.
ModBase	Search...
Protein-protein interaction databases
STRING	370438.PTH_1243.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAF59424; BAF59424; PTH_1243.
GeneID	5137942.
KEGG	pth:PTH_1243.
PATRIC	22909603. VBIPelThe8413_1399.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000222509.
KO	K01971.
OMA	VEVKYGQ.
ProtClustDB	CLSK862724.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5D2W1_PELTS

Accession

Primary (citable) accession number: A5D2W1

Entry history

Integrated into UniProtKB/TrEMBL:	June 12, 2007
Last sequence update:	June 12, 2007
Last modified:	May 1, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)