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A5D2P5 (A5D2P5_PELTS) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Cobalamin biosynthesis protein CobD HAMAP-Rule MF_00024
Gene names
Name:CbiB EMBL BAF59493.1
Synonyms:cobD HAMAP-Rule MF_00024
Ordered Locus Names:PTH_1312 EMBL BAF59493.1
OrganismPelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) [Complete proteome] [HAMAP] EMBL BAF59493.1
Taxonomic identifier370438 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Clostridiales › Peptococcaceae › Pelotomaculum ›

Protein attributes

Sequence length321 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group By similarity. HAMAP-Rule MF_00024

Pathway

Cofactor biosynthesis; adenosylcobalamin biosynthesis. HAMAP-Rule MF_00024

Subcellular location

Cell membrane; Multi-pass membrane protein By similarity HAMAP-Rule MF_00024.

Sequence similarities

Belongs to the CobD/CbiB family. HAMAP-Rule MF_00024

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Transmembrane51 – 7121Helical; By similarity HAMAP-Rule MF_00024
Transmembrane89 – 10921Helical; By similarity HAMAP-Rule MF_00024
Transmembrane155 – 17521Helical; By similarity HAMAP-Rule MF_00024
Transmembrane207 – 22721Helical; By similarity HAMAP-Rule MF_00024
Transmembrane297 – 31721Helical; By similarity HAMAP-Rule MF_00024

Sequences

Sequence LengthMass (Da)Tools
A5D2P5 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: 2B0A1EBD02437BE8

FASTA32135,046
        10         20         30         40         50         60 
MLENYAIQVF LAYLVDLAVG DPRWLPHPVV VMGKIITFLE KLTRRFLKSP LALLAAGMLM 

        70         80         90        100        110        120 
AVALPAGSWY FTSLLLDWAF NLNRWAGYFL SIWLMSTTIA GRGLAGAAMK VHSLLNKGDL 

       130        140        150        160        170        180 
AGARREVGMI VGRDTDRMDK KEVTRAAVET VAENVVDAVV APVFYAFLGG APLAMAYRTV 

       190        200        210        220        230        240 
NTLDSMVGYK NEKYINFGMA SARLDDLANF IPARITGAAL VIAALILRMS PKRTFMSILR 

       250        260        270        280        290        300 
DAPAHPSPNS GIPESAVAGA LGVRLGGINY YNGRESFRPY MGDEVVRLEP YHIKQTVGLM 

       310        320 
RLTSAMVVVL GVIIAALPKY F

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References

[1]"The genome of Pelotomaculum thermopropionicum reveals niche-associated evolution in anaerobic microbiota."
Kosaka T., Kato S., Shimoyama T., Ishii S., Abe T., Watanabe K.
Genome Res. 18:442-448(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 13744 / JCM 10971 / SI.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP009389 Genomic DNA. Translation: BAF59493.1.
RefSeqYP_001211862.1. NC_009454.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING370438.PTH_1312.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAF59493; BAF59493; PTH_1312.
GeneID5140271.
KEGGpth:PTH_1312.
PATRIC22909759. VBIPelThe8413_1477.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1270.
HOGENOMHOG000290070.
KOK02227.
OMAEAIFAYC.
ProtClustDBCLSK843119.

Enzyme and pathway databases

UniPathwayUPA00148.

Family and domain databases

HAMAPMF_00024. CobD_CbiB.
InterProIPR004485. Cobalamin_biosynth_CobD/CbiB.
[Graphical view]
PfamPF03186. CobD_Cbib. 1 hit.
[Graphical view]
TIGRFAMsTIGR00380. cobD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA5D2P5_PELTS
AccessionPrimary (citable) accession number: A5D2P5
Entry history
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: May 1, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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