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Protein
Submitted name:

Ribulose-bisphosphate carboxylase form II

Gene

cbbM

Organism
Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. magnesium ion binding Source: InterPro
  2. ribulose-bisphosphate carboxylase activity Source: UniProtKB-EC

GO - Biological processi

  1. carbon fixation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Enzyme and pathway databases

BioCyciCVES412965:GHZZ-652-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Ribulose-bisphosphate carboxylase form IIImported (EC:4.1.1.39Imported)
Gene namesi
Name:cbbMImported
Ordered Locus Names:COSY_0653Imported
OrganismiVesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA)Imported
Taxonomic identifieri412965 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriasulfur-oxidizing symbionts
ProteomesiUP000000247: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi412965.COSY_0653.

Structurei

3D structure databases

ProteinModelPortaliA5CWB0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1850.
HOGENOMiHOG000230831.
KOiK01601.
OMAiNQYLHYH.
OrthoDBiEOG66QKT8.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01339. RuBisCO_L_type2.
InterProiIPR020871. RuBisCO.
IPR020878. RuBisCo_large_chain_AS.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5CWB0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDQSNRYADL SLDEDTLLAE GGHILVAYTM NIMPNFGGYL ETAAHFAAES
60 70 80 90 100
STGTNVEVST TDDFTKDLDA MVYEIDEVKG IMKIAYPCGL FDRNLIDGRA
110 120 130 140 150
MVVSFLTLAI GNNQGMGDVK CAQMIDFHVP KQMLDIFDGP SVDITDLWNL
160 170 180 190 200
LGRDRKNGGY IAGTIIKPKL GLRPQPFAEA AYQFWLGGDF IKNDEPQGNQ
210 220 230 240 250
VYARMKDVMP LVSDAMKRAQ DETGEAKIFS ANITADDYHE MIARGEYILE
260 270 280 290 300
AFGENAHHVA FLVDGYVGGC GMVTTARRNF PGQYLHYHRA GHGAITSPSS
310 320 330 340 350
VRGYTALVLA KLSRLMGASG IHVGTMGYGK MEGGADDRNI AYMIERDSAD
360 370 380 390 400
GPVYHQEWFG MKPTTPIISG GMNALRLPGF FENLGHGNVI NTSGGGSYGH
410 420 430 440 450
IDSPSAGAKS LRQAYDCWMA KADPIEFARD NNEFARAFES FPGDADSLYP
460
GWRDKLGVHK
Length:460
Mass (Da):50,289
Last modified:June 12, 2007 - v1
Checksum:iADFD0E4F9B87956D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP009247 Genomic DNA. Translation: BAF61766.1.
RefSeqiYP_001219490.1. NC_009465.1.

Genome annotation databases

EnsemblBacteriaiBAF61766; BAF61766; COSY_0653.
GeneIDi5171911.
KEGGivok:COSY_0653.
PATRICi32021163. VBICanVes128383_0655.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP009247 Genomic DNA. Translation: BAF61766.1.
RefSeqiYP_001219490.1. NC_009465.1.

3D structure databases

ProteinModelPortaliA5CWB0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi412965.COSY_0653.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAF61766; BAF61766; COSY_0653.
GeneIDi5171911.
KEGGivok:COSY_0653.
PATRICi32021163. VBICanVes128383_0655.

Phylogenomic databases

eggNOGiCOG1850.
HOGENOMiHOG000230831.
KOiK01601.
OMAiNQYLHYH.
OrthoDBiEOG66QKT8.

Enzyme and pathway databases

BioCyciCVES412965:GHZZ-652-MONOMER.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01339. RuBisCO_L_type2.
InterProiIPR020871. RuBisCO.
IPR020878. RuBisCo_large_chain_AS.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Reduced genome of the thioautotrophic intracellular symbiont in a deep-sea clam, Calyptogena okutanii."
    Kuwahara H., Yoshida T., Takaki Y., Shimamura S., Nishi S., Harada M., Matsuyama K., Takishita K., Kawato M., Uematsu K., Fujiwara Y., Sato T., Kato C., Kitagawa M., Kato I., Maruyama T.
    Curr. Biol. 17:881-886(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HAImported.

Entry informationi

Entry nameiA5CWB0_VESOH
AccessioniPrimary (citable) accession number: A5CWB0
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: February 4, 2015
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.