A5CU82 (A5CU82_CLAM3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
30S ribosomal protein S13 HAMAP MF_01315

Gene names

Name:	rpsM HAMAP MF_01315 EMBL CAN02669.1
Ordered Locus Names:	CMM_2586

Organism

Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) [Complete proteome] [HAMAP] EMBL CAN02669.1

Taxonomic identifier

443906 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length	124 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA By similarity. RuleBase RU003831 Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites By similarity. HAMAP MF_01315
Subunit structure	Part of the 30S ribosomal subunit By similarity. RuleBase RU003831 Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome By similarity. HAMAP MF_01315
Sequence similarities	Belongs to the ribosomal protein S13P family. HAMAP MF_01315 RuleBase RU003830

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP MF_01315 RuleBase RU003831 tRNA-binding HAMAP MF_01315
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP MF_01315 RuleBase RU003830 EMBL CAN02669.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro tRNA binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5CU82 [UniParc]. Last modified June 12, 2007. Version 1. Checksum: 47BAAB150A25E3FC	FASTA	124	14,014
	10 20 30 40 50 60 MARLAGVDLP RDKRVEIALT YIYGVGRTSS VKTLEDTGID KDIRVKDLSD DQLIALRDYI 70 80 90 100 110 120 DGNFKVEGDL RREVAADIRR KVEIGSYEGI RHRRGLPVHG QRTKTNARTR KGPKRTVAGK KKAR

References

[1]

"The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity." Gartemann K.-H., Abt B., Bekel T., Burger A., Engemann J., Fluegel M., Gaigalat L., Goesmann A., Graefen I., Kalinowski J., Kaup O., Kirchner O., Krause L., Linke B., McHardy A., Meyer F., Pohle S., Rueckert C. , Schneiker S., Zellermann E.-M., Puehler A., Eichenlaub R., Kaiser O., Bartels D. J. Bacteriol. 190:2138-2149(2008) [PubMed: 18192381] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM711867 Genomic DNA. Translation: CAN02669.1.
RefSeq	YP_001223331.1. NC_009480.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	A5CU82.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5173081.
GenomeReviews	Gene locus CMM_2586 in contig AM711867_GR.
KEGG	cmi:CMM_2586.
PATRIC	21456015. VBIClaMic82482_2705.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0099.
HOGENOM	HBG737405.
OMA	YRGRRHR.
ProtClustDB	PRK05179.
Family and domain databases
HAMAP	MF_01315_B. Ribosomal_S13_B. [Tree]
InterPro	IPR001892. Ribosomal_S13. IPR010979. Ribosomal_S13-like_H2TH. IPR019980. Ribosomal_S13_bac-type. IPR018269. Ribosomal_S13_CS. [Graphical view]
KO	K02952.
PANTHER	PTHR10871. PTHR10871. 1 hit.
Pfam	PF00416. Ribosomal_S13. 1 hit. [Graphical view]
PIRSF	PIRSF002134. Ribosomal_S13. 1 hit.
SUPFAM	SSF46946. Ribosomal_H2TH. 1 hit.
TIGRFAMs	TIGR03631. Bact_S13. 1 hit.
PROSITE	PS00646. RIBOSOMAL_S13_1. 1 hit. PS50159. RIBOSOMAL_S13_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5CU82_CLAM3

Accession

Primary (citable) accession number: A5CU82

Entry history

Integrated into UniProtKB/TrEMBL:	June 12, 2007
Last sequence update:	June 12, 2007
Last modified:	December 14, 2011
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)