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A5CSR6

- A5CSR6_CLAM3

UniProt

A5CSR6 - A5CSR6_CLAM3

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Protein
Submitted name:

Uncharacterized protein

Gene

CMM_2074

Organism
Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciCMIC443906:GCI2-2136-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Ordered Locus Names:CMM_2074Imported
OrganismiClavibacter michiganensis subsp. michiganensis (strain NCPPB 382)Imported
Taxonomic identifieri443906 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeMicrobacteriaceaeClavibacter
ProteomesiUP000001564: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi443906.CMM_2074.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5CSR6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MEVDGHRIAL TNLDKVLYPA TGTTKGDVIA YYAAIAPHML PHLRDRPVTR
60 70 80 90 100
KRWVDGVGTD EAPGKMFFQK DLDAHTPEWV QRRAIQHRDH ANDYPLVGDV
110 120 130 140 150
ATLTWLGQIA ALELHVPQWR FGRTGDERRP DRLVLDLDPG PGAGLPECVE
160 170 180 190 200
VAKAARAILR DMGLEPYPVT SGSKGIHLYA ALDGSHDASR VSEVAHELAR
210 220 230 240 250
ALEADHPDLV VSDMKKALRE GKVLVDWSQN NPNKTTVAPY SLRGRSRPTV
260 270 280 290 300
AVPRTWRELS SPTLLHLELD EVIARMRRRA DPLAPVEEGH RESLEPTRER
310 320 330 340 350
LAGFARKEPA ADADGADDRL ATYRSKRDAA KTSEPVPAES PAPSEGSTFV
360 370 380 390 400
IQEHHARALH WDFRLEHDGV LVSWALPKGV PTEHGTNHLA VQTEDHPLEY
410 420 430 440 450
GSFEGTIPAG EYGGGEVTIW DAGTFELEKW RDGEEVIATL HGRGDGTGID
460 470 480 490 500
GPRRYALIHT GGHGKVDANW LIHLMEPADA PATARAKPTR PASLEKAGGR
510 520 530 540 550
TRVGARRKGG AASAPAPMLA TAATAAGLDA DEEWAVEMKW DGYRAIAVVA
560 570 580 590 600
DGRATITSRN GVDLTPAFPE LADLPDSLDV DAAVLDGEIV VLGDGGHPDF
610 620 630 640 650
GLLQTRLGLT GEKEIARARK AAPVHLMLFD ALAIGDRVLV EEPYRDRRAA
660 670 680 690 700
LLDAVRSPGR GRIQVPPAFD GDLGGALATS RELGLEGVVA KRVDAPYESG
710 720 730 740 750
RRSSAWIKIK HHRAQEVVVG GWRPGSGSRA SGIGSLLVGV PGPDGLEYAG
760 770 780 790 800
RVGTGFTERD LADALRRFGP LARKTSPFAD VPAADARDAH WITPRLVGEV
810 820 830
EFAEWTSTGR LRQASWRGWR HDKSSDEVVR ED
Length:832
Mass (Da):90,351
Last modified:June 12, 2007 - v1
Checksum:iCF601D18011DE2BB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM711867 Genomic DNA. Translation: CAN02137.1.
RefSeqiYP_001222816.1. NC_009480.1.

Genome annotation databases

EnsemblBacteriaiCAN02137; CAN02137; CMM_2074.
GeneIDi5175015.
KEGGicmi:CMM_2074.
PATRICi21454975. VBIClaMic82482_2193.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM711867 Genomic DNA. Translation: CAN02137.1 .
RefSeqi YP_001222816.1. NC_009480.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 443906.CMM_2074.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAN02137 ; CAN02137 ; CMM_2074 .
GeneIDi 5175015.
KEGGi cmi:CMM_2074.
PATRICi 21454975. VBIClaMic82482_2193.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi SKGIHLY.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci CMIC443906:GCI2-2136-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity."
    Gartemann K.-H., Abt B., Bekel T., Burger A., Engemann J., Fluegel M., Gaigalat L., Goesmann A., Graefen I., Kalinowski J., Kaup O., Kirchner O., Krause L., Linke B., McHardy A., Meyer F., Pohle S., Rueckert C.
    , Schneiker S., Zellermann E.-M., Puehler A., Eichenlaub R., Kaiser O., Bartels D.
    J. Bacteriol. 190:2138-2149(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NCPPB 382Imported.

Entry informationi

Entry nameiA5CSR6_CLAM3
AccessioniPrimary (citable) accession number: A5CSR6
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: October 29, 2014
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3