A5CSR6 (A5CSR6_CLAM3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Uncharacterized protein EMBL CAN02137.1

Gene names

Ordered Locus Names:

CMM_2074 EMBL CAN02137.1

Organism

Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) [Complete proteome] [HAMAP] EMBL CAN02137.1

Taxonomic identifier

443906 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter › Clavibacter michiganensis › Clavibacter michiganensis subsp. michiganensis

Protein attributes

Sequence length	832 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5CSR6 [UniParc]. Last modified June 12, 2007. Version 1. Checksum: CF601D18011DE2BB	FASTA	832	90,351
	10 20 30 40 50 60 MEVDGHRIAL TNLDKVLYPA TGTTKGDVIA YYAAIAPHML PHLRDRPVTR KRWVDGVGTD 70 80 90 100 110 120 EAPGKMFFQK DLDAHTPEWV QRRAIQHRDH ANDYPLVGDV ATLTWLGQIA ALELHVPQWR 130 140 150 160 170 180 FGRTGDERRP DRLVLDLDPG PGAGLPECVE VAKAARAILR DMGLEPYPVT SGSKGIHLYA 190 200 210 220 230 240 ALDGSHDASR VSEVAHELAR ALEADHPDLV VSDMKKALRE GKVLVDWSQN NPNKTTVAPY 250 260 270 280 290 300 SLRGRSRPTV AVPRTWRELS SPTLLHLELD EVIARMRRRA DPLAPVEEGH RESLEPTRER 310 320 330 340 350 360 LAGFARKEPA ADADGADDRL ATYRSKRDAA KTSEPVPAES PAPSEGSTFV IQEHHARALH 370 380 390 400 410 420 WDFRLEHDGV LVSWALPKGV PTEHGTNHLA VQTEDHPLEY GSFEGTIPAG EYGGGEVTIW 430 440 450 460 470 480 DAGTFELEKW RDGEEVIATL HGRGDGTGID GPRRYALIHT GGHGKVDANW LIHLMEPADA 490 500 510 520 530 540 PATARAKPTR PASLEKAGGR TRVGARRKGG AASAPAPMLA TAATAAGLDA DEEWAVEMKW 550 560 570 580 590 600 DGYRAIAVVA DGRATITSRN GVDLTPAFPE LADLPDSLDV DAAVLDGEIV VLGDGGHPDF 610 620 630 640 650 660 GLLQTRLGLT GEKEIARARK AAPVHLMLFD ALAIGDRVLV EEPYRDRRAA LLDAVRSPGR 670 680 690 700 710 720 GRIQVPPAFD GDLGGALATS RELGLEGVVA KRVDAPYESG RRSSAWIKIK HHRAQEVVVG 730 740 750 760 770 780 GWRPGSGSRA SGIGSLLVGV PGPDGLEYAG RVGTGFTERD LADALRRFGP LARKTSPFAD 790 800 810 820 830 VPAADARDAH WITPRLVGEV EFAEWTSTGR LRQASWRGWR HDKSSDEVVR ED

References

[1]

"The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity." Gartemann K.H., Abt B., Bekel T., Burger A., Engemann J., Flugel M., Gaigalat L., Goesmann A., Grafen I., Kalinowski J., Kaup O., Kirchner O., Krause L., Linke B., McHardy A., Meyer F., Pohle S., Ruckert C. , Schneiker S., Zellermann E.M., Puhler A., Eichenlaub R., Kaiser O., Bartels D. J. Bacteriol. 190:2138-2149(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NCPPB 382 EMBL CAN02137.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM711867 Genomic DNA. Translation: CAN02137.1.
RefSeq	YP_001222816.1. NC_009480.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	443906.CMM_2074.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAN02137; CAN02137; CMM_2074.
GeneID	5175015.
KEGG	cmi:CMM_2074.
PATRIC	21454975. VBIClaMic82482_2193.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	SGSKGIH.
ProtClustDB	PRK09632.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5CSR6_CLAM3

Accession

Primary (citable) accession number: A5CSR6

Entry history

Integrated into UniProtKB/TrEMBL:	June 12, 2007
Last sequence update:	June 12, 2007
Last modified:	May 1, 2013
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)