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A5CSR6 (A5CSR6_CLAM3) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length832 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
A5CSR6 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: CF601D18011DE2BB

FASTA83290,351
        10         20         30         40         50         60 
MEVDGHRIAL TNLDKVLYPA TGTTKGDVIA YYAAIAPHML PHLRDRPVTR KRWVDGVGTD 

        70         80         90        100        110        120 
EAPGKMFFQK DLDAHTPEWV QRRAIQHRDH ANDYPLVGDV ATLTWLGQIA ALELHVPQWR 

       130        140        150        160        170        180 
FGRTGDERRP DRLVLDLDPG PGAGLPECVE VAKAARAILR DMGLEPYPVT SGSKGIHLYA 

       190        200        210        220        230        240 
ALDGSHDASR VSEVAHELAR ALEADHPDLV VSDMKKALRE GKVLVDWSQN NPNKTTVAPY 

       250        260        270        280        290        300 
SLRGRSRPTV AVPRTWRELS SPTLLHLELD EVIARMRRRA DPLAPVEEGH RESLEPTRER 

       310        320        330        340        350        360 
LAGFARKEPA ADADGADDRL ATYRSKRDAA KTSEPVPAES PAPSEGSTFV IQEHHARALH 

       370        380        390        400        410        420 
WDFRLEHDGV LVSWALPKGV PTEHGTNHLA VQTEDHPLEY GSFEGTIPAG EYGGGEVTIW 

       430        440        450        460        470        480 
DAGTFELEKW RDGEEVIATL HGRGDGTGID GPRRYALIHT GGHGKVDANW LIHLMEPADA 

       490        500        510        520        530        540 
PATARAKPTR PASLEKAGGR TRVGARRKGG AASAPAPMLA TAATAAGLDA DEEWAVEMKW 

       550        560        570        580        590        600 
DGYRAIAVVA DGRATITSRN GVDLTPAFPE LADLPDSLDV DAAVLDGEIV VLGDGGHPDF 

       610        620        630        640        650        660 
GLLQTRLGLT GEKEIARARK AAPVHLMLFD ALAIGDRVLV EEPYRDRRAA LLDAVRSPGR 

       670        680        690        700        710        720 
GRIQVPPAFD GDLGGALATS RELGLEGVVA KRVDAPYESG RRSSAWIKIK HHRAQEVVVG 

       730        740        750        760        770        780 
GWRPGSGSRA SGIGSLLVGV PGPDGLEYAG RVGTGFTERD LADALRRFGP LARKTSPFAD 

       790        800        810        820        830 
VPAADARDAH WITPRLVGEV EFAEWTSTGR LRQASWRGWR HDKSSDEVVR ED 

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References

[1]"The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity."
Gartemann K.-H., Abt B., Bekel T., Burger A., Engemann J., Fluegel M., Gaigalat L., Goesmann A., Graefen I., Kalinowski J., Kaup O., Kirchner O., Krause L., Linke B., McHardy A., Meyer F., Pohle S., Rueckert C. expand/collapse author list , Schneiker S., Zellermann E.-M., Puehler A., Eichenlaub R., Kaiser O., Bartels D.
J. Bacteriol. 190:2138-2149(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NCPPB 382 EMBL CAN02137.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM711867 Genomic DNA. Translation: CAN02137.1.
RefSeqYP_001222816.1. NC_009480.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING443906.CMM_2074.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAN02137; CAN02137; CMM_2074.
GeneID5175015.
KEGGcmi:CMM_2074.
PATRIC21454975. VBIClaMic82482_2193.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMASKGIHLY.
OrthoDBEOG661H49.

Enzyme and pathway databases

BioCycCMIC443906:GCI2-2136-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA5CSR6_CLAM3
AccessionPrimary (citable) accession number: A5CSR6
Entry history
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: May 14, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)