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A5CSR6

- A5CSR6_CLAM3

UniProt

A5CSR6 - A5CSR6_CLAM3

Protein
Submitted name:

Uncharacterized protein

Gene

CMM_2074

Organism
Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 47 (01 Oct 2014)
      Sequence version 1 (12 Jun 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Enzyme and pathway databases

    BioCyciCMIC443906:GCI2-2136-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Ordered Locus Names:CMM_2074Imported
    OrganismiClavibacter michiganensis subsp. michiganensis (strain NCPPB 382)Imported
    Taxonomic identifieri443906 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeMicrobacteriaceaeClavibacter
    ProteomesiUP000001564: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi443906.CMM_2074.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSKGIHLY.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A5CSR6-1 [UniParc]FASTAAdd to Basket

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    MEVDGHRIAL TNLDKVLYPA TGTTKGDVIA YYAAIAPHML PHLRDRPVTR    50
    KRWVDGVGTD EAPGKMFFQK DLDAHTPEWV QRRAIQHRDH ANDYPLVGDV 100
    ATLTWLGQIA ALELHVPQWR FGRTGDERRP DRLVLDLDPG PGAGLPECVE 150
    VAKAARAILR DMGLEPYPVT SGSKGIHLYA ALDGSHDASR VSEVAHELAR 200
    ALEADHPDLV VSDMKKALRE GKVLVDWSQN NPNKTTVAPY SLRGRSRPTV 250
    AVPRTWRELS SPTLLHLELD EVIARMRRRA DPLAPVEEGH RESLEPTRER 300
    LAGFARKEPA ADADGADDRL ATYRSKRDAA KTSEPVPAES PAPSEGSTFV 350
    IQEHHARALH WDFRLEHDGV LVSWALPKGV PTEHGTNHLA VQTEDHPLEY 400
    GSFEGTIPAG EYGGGEVTIW DAGTFELEKW RDGEEVIATL HGRGDGTGID 450
    GPRRYALIHT GGHGKVDANW LIHLMEPADA PATARAKPTR PASLEKAGGR 500
    TRVGARRKGG AASAPAPMLA TAATAAGLDA DEEWAVEMKW DGYRAIAVVA 550
    DGRATITSRN GVDLTPAFPE LADLPDSLDV DAAVLDGEIV VLGDGGHPDF 600
    GLLQTRLGLT GEKEIARARK AAPVHLMLFD ALAIGDRVLV EEPYRDRRAA 650
    LLDAVRSPGR GRIQVPPAFD GDLGGALATS RELGLEGVVA KRVDAPYESG 700
    RRSSAWIKIK HHRAQEVVVG GWRPGSGSRA SGIGSLLVGV PGPDGLEYAG 750
    RVGTGFTERD LADALRRFGP LARKTSPFAD VPAADARDAH WITPRLVGEV 800
    EFAEWTSTGR LRQASWRGWR HDKSSDEVVR ED 832
    Length:832
    Mass (Da):90,351
    Last modified:June 12, 2007 - v1
    Checksum:iCF601D18011DE2BB
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM711867 Genomic DNA. Translation: CAN02137.1.
    RefSeqiWP_012038761.1. NC_009480.1.
    YP_001222816.1. NC_009480.1.

    Genome annotation databases

    EnsemblBacteriaiCAN02137; CAN02137; CMM_2074.
    GeneIDi5175015.
    KEGGicmi:CMM_2074.
    PATRICi21454975. VBIClaMic82482_2193.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM711867 Genomic DNA. Translation: CAN02137.1 .
    RefSeqi WP_012038761.1. NC_009480.1.
    YP_001222816.1. NC_009480.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 443906.CMM_2074.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAN02137 ; CAN02137 ; CMM_2074 .
    GeneIDi 5175015.
    KEGGi cmi:CMM_2074.
    PATRICi 21454975. VBIClaMic82482_2193.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SKGIHLY.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci CMIC443906:GCI2-2136-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity."
      Gartemann K.-H., Abt B., Bekel T., Burger A., Engemann J., Fluegel M., Gaigalat L., Goesmann A., Graefen I., Kalinowski J., Kaup O., Kirchner O., Krause L., Linke B., McHardy A., Meyer F., Pohle S., Rueckert C.
      , Schneiker S., Zellermann E.-M., Puehler A., Eichenlaub R., Kaiser O., Bartels D.
      J. Bacteriol. 190:2138-2149(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NCPPB 382Imported.

    Entry informationi

    Entry nameiA5CSR6_CLAM3
    AccessioniPrimary (citable) accession number: A5CSR6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 12, 2007
    Last sequence update: June 12, 2007
    Last modified: October 1, 2014
    This is version 47 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3