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Protein
Submitted name:

Putative rRNA cytosine-C5-methylases

Gene

CMM_1774

Organism
Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

MethyltransferaseSAAS annotationImported, Transferase

Keywords - Ligandi

RNA-bindingSAAS annotation, S-adenosyl-L-methionineSAAS annotation

Enzyme and pathway databases

BioCyciCMIC443906:GCI2-1828-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative rRNA cytosine-C5-methylasesImported (EC:2.1.1.-Imported)
Gene namesi
Ordered Locus Names:CMM_1774Imported
OrganismiClavibacter michiganensis subsp. michiganensis (strain NCPPB 382)Imported
Taxonomic identifieri443906 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaMicrococcalesMicrobacteriaceaeClavibacter
Proteomesi
  • UP000001564 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi443906.CMM_1774.

Structurei

3D structure databases

ProteinModelPortaliA5CRW7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini208 – 499292SAM_MT_RSMB_NOPInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037302.
KOiK03500.
OMAiLRVNRQH.
OrthoDBiEOG6091D0.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR018314. Fmu/NOL1/Nop2p_CS.
IPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
PROSITEiPS01153. NOL1_NOP2_SUN. 1 hit.
PS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5CRW7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDSTGSPAR RPDGRRTGGA RRAADRGSRP ADDRSAVGGP SSVSPARRVA
60 70 80 90 100
YEVVSAVRES DAYANLLLPV RIRRAALSAQ DAALATELAY GTLRMSGYYD
110 120 130 140 150
RVIELAAGRP VTAIDAPILD VLRLSVHQLL SMRVATHAAV NEGVDMARAV
160 170 180 190 200
GSRSATGFVN GVLRTITRSE PAEWRQRVLD SAASDDERLA LEHSHPLWVL
210 220 230 240 250
RALRQALARE GRADELEDLL RADNAAPAVS LVALPGLATV EETQEQPAAF
260 270 280 290 300
SPVGAYLEGG DPMDAPGVAE GRVRVQDEGS QLAALALSRA RAVTPGERWL
310 320 330 340 350
DLCAGPGGKA ALLAAEAGRS GALLTANELV PARAGLVRDA LRAVAGDTEV
360 370 380 390 400
WELDGTTVGE SHPGAFDRIL LDAPCSGLGA LRRRPEARWR KTPRDVAGLG
410 420 430 440 450
ALQTGLIDSA IGALAPGGIL AYVTCSPHLA ETRAIVQAAL QRHPDVTALD
460 470 480 490
TRAVLQEVAD GDLELPDADP DAGARGSSVQ LWPHRHGTDA MFIALLTRR
Length:499
Mass (Da):52,519
Last modified:June 12, 2007 - v1
Checksum:iC362255D7159A2FE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM711867 Genomic DNA. Translation: CAN01830.1.

Genome annotation databases

EnsemblBacteriaiCAN01830; CAN01830; CMM_1774.
KEGGicmi:CMM_1774.
PATRICi21454361. VBIClaMic82482_1894.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM711867 Genomic DNA. Translation: CAN01830.1.

3D structure databases

ProteinModelPortaliA5CRW7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi443906.CMM_1774.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAN01830; CAN01830; CMM_1774.
KEGGicmi:CMM_1774.
PATRICi21454361. VBIClaMic82482_1894.

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037302.
KOiK03500.
OMAiLRVNRQH.
OrthoDBiEOG6091D0.

Enzyme and pathway databases

BioCyciCMIC443906:GCI2-1828-MONOMER.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR018314. Fmu/NOL1/Nop2p_CS.
IPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
PROSITEiPS01153. NOL1_NOP2_SUN. 1 hit.
PS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity."
    Gartemann K.H., Abt B., Bekel T., Burger A., Engemann J., Flugel M., Gaigalat L., Goesmann A., Grafen I., Kalinowski J., Kaup O., Kirchner O., Krause L., Linke B., McHardy A., Meyer F., Pohle S., Ruckert C.
    , Schneiker S., Zellermann E.M., Puhler A., Eichenlaub R., Kaiser O., Bartels D.
    J. Bacteriol. 190:2138-2149(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NCPPB 382Imported.

Entry informationi

Entry nameiA5CRW7_CLAM3
AccessioniPrimary (citable) accession number: A5CRW7
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: May 11, 2016
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.