A5CQR6 (A5CQR6_CLAM3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribonuclease RuleBase RU003515
EC=3.1.26.- RuleBase RU003515

Gene names

Name:	rnhB EMBL CAN01420.1
Ordered Locus Names:	CMM_1375

Organism

Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) [Complete proteome] [HAMAP] EMBL CAN01420.1

Taxonomic identifier

443906 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length	219 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Endonuclease that specifically degrades the RNA of RNA-DNA hybrids By similarity. RuleBase RU003515
Catalytic activity	Endonucleolytic cleavage to 5'-phosphomonoester. RuleBase RU003515
Sequence similarities	Belongs to the RNase HII family. RuleBase RU003515

Ontologies

Keywords
Molecular function	Endonuclease RuleBase RU003515 Hydrolase Nuclease
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	RNA binding Inferred from electronic annotation. Source: InterPro ribonuclease H activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5CQR6 [UniParc]. Last modified June 12, 2007. Version 1. Checksum: A0E79FC4BF555D46	FASTA	219	22,974
	10 20 30 40 50 60 MPVADPTLDL EHELLHAGAA LVIGCDEVGR GALAGPVAVG MAVVGPDAVG FPPGLRDSKM 70 80 90 100 110 120 LSEKRREALH PVVAGWVRHS AVGMASAAEV DELGITACLG LAGRRALVEL HHAGVPLLDS 130 140 150 160 170 180 VVLLDGAHDW LTPHLAHPVP VRLRVKADRD CASVAAASVL AKVERDRMMA VWHEDLPEYG 190 200 210 WAGNKGYGSA AHLDAIRARG ASPLHRRTWL SGVLGDATP

References

[1]

"The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity." Gartemann K.-H., Abt B., Bekel T., Burger A., Engemann J., Fluegel M., Gaigalat L., Goesmann A., Graefen I., Kalinowski J., Kaup O., Kirchner O., Krause L., Linke B., McHardy A., Meyer F., Pohle S., Rueckert C. , Schneiker S., Zellermann E.-M., Puehler A., Eichenlaub R., Kaiser O., Bartels D. J. Bacteriol. 190:2138-2149(2008) [PubMed: 18192381] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM711867 Genomic DNA. Translation: CAN01420.1.
RefSeq	YP_001222116.1. NC_009480.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	A5CQR6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5173114.
GenomeReviews	Gene locus CMM_1375 in contig AM711867_GR.
KEGG	cmi:CMM_1375.
PATRIC	21453521. VBIClaMic82482_1484.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0164.
HOGENOM	HBG584843.
OMA	DGKHDYL.
ProtClustDB	PRK00015.
Family and domain databases
InterPro	IPR001352. RNase_HII/HIII. IPR024567. RNase_HII/HIII_dom. IPR012337. RNaseH-like_dom. [Graphical view]
KO	K03470.
PANTHER	PTHR10954. RNase_HII/HIII. 1 hit.
Pfam	PF01351. RNase_HII. 1 hit. [Graphical view]
SUPFAM	SSF53098. RNaseH_fold. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A5CQR6_CLAM3

Accession

Primary (citable) accession number: A5CQR6

Entry history

Integrated into UniProtKB/TrEMBL:	June 12, 2007
Last sequence update:	June 12, 2007
Last modified:	December 14, 2011
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)