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A5CQ41 (A5CQ41_CLAM3) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Arginine--tRNA ligase HAMAP MF_00123
EC=6.1.1.19 HAMAP MF_00123
Alternative name(s):
Arginyl-tRNA synthetase HAMAP MF_00123
Gene names
Name:argS HAMAP MF_00123 EMBL CAN01194.1
Ordered Locus Names:CMM_1150
OrganismClavibacter michiganensis subsp. michiganensis (strain NCPPB 382) [Complete proteome] [HAMAP] EMBL CAN01194.1
Taxonomic identifier443906 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length554 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). HAMAP MF_00123

Subunit structure

Monomer By similarity. HAMAP MF_00123

Subcellular location

Cytoplasm By similarity HAMAP MF_00123.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family. HAMAP MF_00123 RuleBase RU003489

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Motif132 – 14211"HIGH" region By similarity HAMAP MF_00123

Sequences

Sequence LengthMass (Da)Tools
A5CQ41 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: 071B8B1F14F71A0B

FASTA55460,376
        10         20         30         40         50         60 
MTTPDLTGAL FDIVARTAGR RPGGDALALS PDMVVLERPR NRDHGDWATN IAMRIAKPLG 

        70         80         90        100        110        120 
EDPRTIAADI AEALGELPQV AKVDVAGPGF INITLEAAAA GALARTIVDA GPAYGRGHTL 

       130        140        150        160        170        180 
DGIRINLEFV SANPTGPIHL GGVRWAAVGD SLARILQAEG ADVTREYYFN DHGSQIDRFA 

       190        200        210        220        230        240 
RSLLASHLGE DTPEDGYGGA YIGEIAERVV AGYDGDLDAL PREEQQEVFR SAGTELMFGE 

       250        260        270        280        290        300 
IKQKLHDFGV DFDVFFHEDS LHESGAVDRA VARLKELGHV FEEDGAVWLR TTTFGDDRDR 

       310        320        330        340        350        360 
VVIRSTGEPA YISGDLGYYL DKRERGFEQN IIMLGADHHG YVGRMMAMAE AFGDTPGVNL 

       370        380        390        400        410        420 
QILIGQMVNL LRDGEPVKMS KRAGTIVTLD DLVDAVGVDA GRYSLVRSSA DQNLDIDLAV 

       430        440        450        460        470        480 
LGKRTNDNPV FYVQYAHART CAVDRNAAAS GVDRSAFAPE LLTHPTESAL LGLLQEFPRI 

       490        500        510        520        530        540 
VAQAAELREP HRVARYIEEL AGSYHRWYDS CRVVPRGDEE VTDLHRTRLW LNDAVRQVVA 

       550 
NGLDLVGVSA PERM

« Hide

References

[1]"The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity."
Gartemann K.-H., Abt B., Bekel T., Burger A., Engemann J., Fluegel M., Gaigalat L., Goesmann A., Graefen I., Kalinowski J., Kaup O., Kirchner O., Krause L., Linke B., McHardy A., Meyer F., Pohle S., Rueckert C. expand/collapse author list , Schneiker S., Zellermann E.-M., Puehler A., Eichenlaub R., Kaiser O., Bartels D.
J. Bacteriol. 190:2138-2149(2008) [PubMed: 18192381] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AM711867 Genomic DNA. Translation: CAN01194.1.
RefSeqYP_001221891.1. NC_009480.1.

3D structure databases

ProteinModelPortalA5CQ41.
ModBaseSearch...

Protein-protein interaction databases

STRINGA5CQ41.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5175073.
GenomeReviewsGene locus CMM_1150 in contig AM711867_GR.
KEGGcmi:CMM_1150.
PATRIC21453053. VBIClaMic82482_1251.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0018.
HOGENOMHBG695395.
OMARMKAAMK.
ProtClustDBPRK01611.

Family and domain databases

HAMAPMF_00123. Arg_tRNA_synth.
[Tree]
InterProIPR001412. aa-tRNA-synth_I_CS.
IPR001278. Arg-tRNA-synth_Ia.
IPR015945. Arg-tRNA-synth_Ia_core.
IPR005148. Arg-tRNA-synth_N.
IPR008909. DALR_anticod-bd.
IPR014729. Rossmann-like_a/b/a_fold.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view]
Gene3DG3DSA:3.30.1360.70. Arg-tRNA-synth_Ic_N. 1 hit.
G3DSA:3.40.50.620. Rossmann-like_a/b/a_fold. 1 hit.
KOK01887.
PANTHERPTHR11956. Arg_tRNA-synt_1c. 1 hit.
PfamPF03485. Arg_tRNA_synt_N. 1 hit.
PF05746. DALR_1. 1 hit.
PF00750. tRNA-synt_1d. 1 hit.
[Graphical view]
PRINTSPR01038. TRNASYNTHARG.
SMARTSM01016. Arg_tRNA_synt_N. 1 hit.
SM00836. DALR_1. 1 hit.
[Graphical view]
SUPFAMSSF55190. Arg-tRNA-synth_Ic_N. 1 hit.
SSF47323. tRNAsyn_1a_bind. 1 hit.
TIGRFAMsTIGR00456. ArgS. 1 hit.
PROSITEPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA5CQ41_CLAM3
AccessionPrimary (citable) accession number: A5CQ41
Entry history
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: January 25, 2012
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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