Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

A5CPC1 (XYLA_CLAM3) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein attributes

Sequence length397 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylopyranose = D-xylulose. HAMAP-Rule MF_00455

Cofactor

Binds 2 magnesium ions per subunit By similarity. HAMAP-Rule MF_00455

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00455

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00455.

Sequence similarities

Belongs to the xylose isomerase family.

Ontologies

Keywords
   Biological processCarbohydrate metabolism
Pentose shunt
Xylose metabolism
   Cellular componentCytoplasm
   LigandMagnesium
Metal-binding
   Molecular functionIsomerase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processD-xylose metabolic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

pentose-phosphate shunt

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionmagnesium ion binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

xylose isomerase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 397397Xylose isomerase HAMAP-Rule MF_00455
PRO_1000026438

Sites

Active site541 By similarity
Active site571 By similarity
Metal binding1811Magnesium 1 By similarity
Metal binding2171Magnesium 1 By similarity
Metal binding2171Magnesium 2 By similarity
Metal binding2201Magnesium 2 By similarity
Metal binding2451Magnesium 1 By similarity
Metal binding2551Magnesium 2 By similarity
Metal binding2571Magnesium 2 By similarity
Metal binding2931Magnesium 1 By similarity

Sequences

Sequence LengthMass (Da)Tools
A5CPC1 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: 2841ADD244D09F38

FASTA39743,837
        10         20         30         40         50         60 
MALTPTREDK FSFGLWTIGY TGADPFGGPT RSDLDVVEGV ERISELGAYG LTFHDDDLFA 

        70         80         90        100        110        120 
FGSTDAERQT QIDRLKGALS DTGIVVPMVT TNLFSAPVFK DGGFTSNDRA VRRFAIRKVL 

       130        140        150        160        170        180 
RNIDLAAELG AQTFVMWGGR EGAEYDSAKD VRGALERYRE AVNLLGDYVT DKGYDIRFAI 

       190        200        210        220        230        240 
EPKPNEPRGD ILLPTLGHAL AFIETLERPE LVGVNPEVGH EQMAGLNFTA GIMQALYQGK 

       250        260        270        280        290        300 
LFHIDLNGQR GIKYDQDLVF GHGDLQNAFS LVDLLENGGV GGGRSYDGPR HFDYKPSRTE 

       310        320        330        340        350        360 
DITGVWDSAA ANMRMYLLLK ERAQAFRADP EVQEALAAAK VQEIYTPTLN EGESYDDILA 

       370        380        390 
DRSSYEDFDA PSYFDAKGFG FVRLNQLALE HLMGARS 

« Hide

References

[1]"The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity."
Gartemann K.-H., Abt B., Bekel T., Burger A., Engemann J., Fluegel M., Gaigalat L., Goesmann A., Graefen I., Kalinowski J., Kaup O., Kirchner O., Krause L., Linke B., McHardy A., Meyer F., Pohle S., Rueckert C. expand/collapse author list , Schneiker S., Zellermann E.-M., Puehler A., Eichenlaub R., Kaiser O., Bartels D.
J. Bacteriol. 190:2138-2149(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NCPPB 382.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM711867 Genomic DNA. Translation: CAN00919.1.
RefSeqYP_001221622.1. NC_009480.1.

3D structure databases

ProteinModelPortalA5CPC1.
SMRA5CPC1. Positions 6-396.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING443906.CMM_0882.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAN00919; CAN00919; CMM_0882.
GeneID5173138.
KEGGcmi:CMM_0882.
PATRIC21452489. VBIClaMic82482_0976.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2115.
HOGENOMHOG000022596.
KOK01805.
OMAFAHETMA.
OrthoDBEOG62NX4R.

Enzyme and pathway databases

BioCycCMIC443906:GCI2-907-MONOMER.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013453. XylA_actinobac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. SSF51658. 1 hit.
TIGRFAMsTIGR02631. xylA_Arthro. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameXYLA_CLAM3
AccessionPrimary (citable) accession number: A5CPC1
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: June 12, 2007
Last modified: May 14, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families