A5CPB5 (A5CPB5_CLAM3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribulokinase HAMAP MF_00520 RuleBase RU003455
EC=2.7.1.16 HAMAP MF_00520 RuleBase RU003455

Gene names

Name:	araB HAMAP MF_00520 EMBL CAN00913.1
Ordered Locus Names:	CMM_0876

Organism

Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) [Complete proteome] [HAMAP] EMBL CAN00913.1

Taxonomic identifier

443906 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length	567 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929
Pathway	Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 2/3. HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929
Sequence similarities	Belongs to the ribulokinase family. HAMAP MF_00520 RuleBase RU003455

Ontologies

Keywords
Biological process	Arabinose catabolism HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929 Carbohydrate metabolism
Ligand	ATP-binding HAMAP MF_00520 SAAS SAAS005929 Nucleotide-binding
Molecular function	Kinase HAMAP MF_00520 RuleBase RU003455 SAAS SAAS005929 EMBL CAN00913.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	L-arabinose catabolic process Inferred from electronic annotation. Source: HAMAP
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ribulokinase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5CPB5 [UniParc]. Last modified June 12, 2007. Version 1. Checksum: FC691EEF8873769A	FASTA	567	60,114
	10 20 30 40 50 60 MPSAPVSTAT EAQPGADTES YVVGVDYGTL SGRAVVVRVS DGVELGSGVL DYPHAVMDDT 70 80 90 100 110 120 LAATGAQLPP EWALQVPSDY VDVLKQAVPA AIREAGIDPA RVIGIGTDFT ACTMVPTLAD 130 140 150 160 170 180 GTPLNEVDGY ADRPHAYVKL WKHHAAQSHA DRINALAEER GEKWLARYGG LISSEWEFAK 190 200 210 220 230 240 GLQLLEEDPE LYGLMEHWVE AADWIVWQLT GSYVRNACTA GYKGILQDGE YPTAEFLGAL 250 260 270 280 290 300 NPDFAEFAEE KVAHEIGQLG SAAGTLSAEA AAWTGLPEGI AVAVGNVDAH VTAPVARAVE 310 320 330 340 350 360 PGQMVAIMGT STCHVMNSDV LTEVPGMCGV VDGGIVSGLY GYEAGQSGVG DIFAWYVKNQ 370 380 390 400 410 420 VPARYAEEAA AAGKSVHQHL TDLAADQPVG GHGLVALDWH SGNRSVLVDH ELSGLVIGTT 430 440 450 460 470 480 LTTRTEEVYR ALLEATAFGT RKIVETFAAS GVPVTEFIVA GGLLKNAFLM QAYSDILRLP 490 500 510 520 530 540 ISVITSEQGP ALGSAIHAAV AAGAYPDVRD AGDAMGKVER GKYQPSEERA LAYDRLYAEY 550 560 STLHDHFGRG ANDVMKRLKS LKREARA

References

[1]

"The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity." Gartemann K.-H., Abt B., Bekel T., Burger A., Engemann J., Fluegel M., Gaigalat L., Goesmann A., Graefen I., Kalinowski J., Kaup O., Kirchner O., Krause L., Linke B., McHardy A., Meyer F., Pohle S., Rueckert C. , Schneiker S., Zellermann E.-M., Puehler A., Eichenlaub R., Kaiser O., Bartels D. J. Bacteriol. 190:2138-2149(2008) [PubMed: 18192381] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM711867 Genomic DNA. Translation: CAN00913.1.
RefSeq	YP_001221616.1. NC_009480.1.
3D structure databases
ProteinModelPortal	A5CPB5.
ModBase	Search...
Protein-protein interaction databases
STRING	A5CPB5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5173055.
GenomeReviews	Gene locus CMM_0876 in contig AM711867_GR.
KEGG	cmi:CMM_0876.
PATRIC	21452477. VBIClaMic82482_0970.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1069.
HOGENOM	HBG312681.
OMA	YEAGQSC.
ProtClustDB	PRK04123.
Family and domain databases
HAMAP	MF_00520. Ribulokinase. [Tree]
InterPro	IPR000577. Carb_kinase_FGGY. IPR018485. Carb_kinase_FGGY_C. IPR018484. Carb_kinase_FGGY_N. IPR005929. L_ribulokin. [Graphical view]
KO	K00853.
PANTHER	PTHR10196. FGGY_kin. 1 hit.
Pfam	PF02782. FGGY_C. 1 hit. PF00370. FGGY_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR01234. L-ribulokinase. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A5CPB5_CLAM3

Accession

Primary (citable) accession number: A5CPB5

Entry history

Integrated into UniProtKB/TrEMBL:	June 12, 2007
Last sequence update:	June 12, 2007
Last modified:	December 14, 2011
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)