Skip Header

Contribute Send feedback
Read comments (?) or add your own

A5CP56 (A5CP56_CLAM3) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Proline iminopeptidase RuleBase RU003421
EC=3.4.11.5 RuleBase RU003421
Gene names
Name:pipB EMBL CAN00851.1
Ordered Locus Names:CMM_0817
OrganismClavibacter michiganensis subsp. michiganensis (strain NCPPB 382) [Complete proteome] [HAMAP] EMBL CAN00851.1
Taxonomic identifier443906 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter

Protein attributes

Sequence length322 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Release of N-terminal proline from a peptide. RuleBase RU003421

Sequence similarities

Belongs to the peptidase S33 family. RuleBase RU003421

Ontologies

Keywords
   Molecular functionAminopeptidase RuleBase RU003421 EMBL CAN00851.1
Hydrolase
Protease
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processproteolysis

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: InterPro

   Molecular functionaminopeptidase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1151Nucleophile By similarity PIRSR PIRSR006431-1
Active site2701 By similarity PIRSR PIRSR006431-1
Active site2981Proton donor By similarity PIRSR PIRSR006431-1

Sequences

Sequence LengthMass (Da)Tools
A5CP56 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: A4034520E82B23C0

FASTA32235,290
        10         20         30         40         50         60 
MQSLFPEIDP HDTGMLDVGD GQLLHWEVSG NPDGIPVVFL HGGPGGGTSP THRRLFDPAR 

        70         80         90        100        110        120 
YRIVLVDQRG CGRSTPHVST PEADLSVNTT WHLVADLERL REHLGVERWL VFGGSWGSTL 

       130        140        150        160        170        180 
ALAYAETHPA RVTGLILRGI FTLRATELDW FYEGPAGMVY PDGWEAFTAP VPGVERGGII 

       190        200        210        220        230        240 
AAYARLLADP DPAVHGPAAV AWSTWEASGI TLLPKPDVVA RFAEPTYALA FARIENHYFM 

       250        260        270        280        290        300 
HGGWMEDGQL IRDAHLLRGI PTEIVQGRYD MCTPAVTAWD LHRALPEARF TMVPDAGHAF 

       310        320 
DEPGILDALI QATERAADRL AR

« Hide

References

[1]"The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity."
Gartemann K.-H., Abt B., Bekel T., Burger A., Engemann J., Fluegel M., Gaigalat L., Goesmann A., Graefen I., Kalinowski J., Kaup O., Kirchner O., Krause L., Linke B., McHardy A., Meyer F., Pohle S., Rueckert C. expand/collapse author list , Schneiker S., Zellermann E.-M., Puehler A., Eichenlaub R., Kaiser O., Bartels D.
J. Bacteriol. 190:2138-2149(2008) [PubMed: 18192381] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AM711867 Genomic DNA. Translation: CAN00851.1.
RefSeqYP_001221557.1. NC_009480.1.

3D structure databases

ProteinModelPortalA5CP56.
ModBaseSearch...

Protein-protein interaction databases

STRINGA5CP56.

Protein family/group databases

MEROPSS33.001.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5173207.
GenomeReviewsGene locus CMM_0817 in contig AM711867_GR.
KEGGcmi:CMM_0817.
PATRIC21452353. VBIClaMic82482_0911.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0596.
HOGENOMHBG677789.
OMAAELDWYY.
ProtClustDBCLSK831507.

Family and domain databases

InterProIPR000073. AB_hydrolase_1.
IPR005944. Pept_S33.
IPR002410. Peptidase_S33.
[Graphical view]
KOK01259.
PANTHERPTHR10992:SF12. PTHR10992:SF12. 1 hit.
PfamPF00561. Abhydrolase_1. 1 hit.
[Graphical view]
PIRSFPIRSF006431. Pept_S33. 1 hit.
PRINTSPR00111. ABHYDROLASE.
PR00793. PROAMNOPTASE.
TIGRFAMsTIGR01249. Pro_imino_pep_1. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA5CP56_CLAM3
AccessionPrimary (citable) accession number: A5CP56
Entry history
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: December 14, 2011
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info