A5CNL3 (A5CNL3_CLAM3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Uncharacterized protein EMBL CAN00651.1

Gene names

Ordered Locus Names:

CMM_0625 EMBL CAN00651.1

Organism

Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) [Complete proteome] [HAMAP] EMBL CAN00651.1

Taxonomic identifier

443906 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Microbacteriaceae › Clavibacter › Clavibacter michiganensis › Clavibacter michiganensis subsp. michiganensis

Protein attributes

Sequence length	122 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH gntR-type DNA-binding domain. SAAS SAAS000524 RuleBase RU000706

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS000524 RuleBase RU000706
Ligand	DNA-binding SAAS SAAS000524 RuleBase RU000706
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A5CNL3 [UniParc]. Last modified June 12, 2007. Version 1. Checksum: E04845F9A86EBBBF	FASTA	122	12,579
	10 20 30 40 50 60 MDPAPGYRIA PGSGTPPYEQ LRAEIARRAS EGELPVGARL PTVRALAEQT GVAVNTVARA 70 80 90 100 110 120 YKELEADGVI ETRGRAGSFV AAQDDVPAPL RAAAVAYAQL AGRLGVADGE ARRLVDEALA AG

References

[1]

"The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity." Gartemann K.H., Abt B., Bekel T., Burger A., Engemann J., Flugel M., Gaigalat L., Goesmann A., Grafen I., Kalinowski J., Kaup O., Kirchner O., Krause L., Linke B., McHardy A., Meyer F., Pohle S., Ruckert C. , Schneiker S., Zellermann E.M., Puhler A., Eichenlaub R., Kaiser O., Bartels D. J. Bacteriol. 190:2138-2149(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NCPPB 382 EMBL CAN00651.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM711867 Genomic DNA. Translation: CAN00651.1.
RefSeq	YP_001221365.1. NC_009480.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	443906.CMM_0625.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAN00651; CAN00651; CMM_0625.
GeneID	5173739.
KEGG	cmi:CMM_0625.
PATRIC	21451949. VBIClaMic82482_0709.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1725.
HOGENOM	HOG000259573.
OMA	KQGTFIA.
ProtClustDB	CLSK2325030.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR000524. Tscrpt_reg_HTH_GntR. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF00392. GntR. 1 hit. [Graphical view]
SMART	SM00345. HTH_GNTR. 1 hit. [Graphical view]
PROSITE	PS50949. HTH_GNTR. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5CNL3_CLAM3

Accession

Primary (citable) accession number: A5CNL3

Entry history

Integrated into UniProtKB/TrEMBL:	June 12, 2007
Last sequence update:	June 12, 2007
Last modified:	May 1, 2013
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)