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Protein
Submitted name:

RluC protein

Gene

rluC

Organism
Orientia tsutsugamushi (strain Boryong) (Rickettsia tsutsugamushi)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

IsomeraseSAAS annotation, LyaseImported

Keywords - Ligandi

RNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciOTSU357244:GCA5-2180-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
RluC proteinImported (EC:4.2.1.70Imported)
Gene namesi
Name:rluCImported
Ordered Locus Names:OTBS_2144Imported
OrganismiOrientia tsutsugamushi (strain Boryong) (Rickettsia tsutsugamushi)Imported
Taxonomic identifieri357244 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeOrientia
ProteomesiUP000001565 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi357244.OTBS_2144.

Structurei

3D structure databases

ProteinModelPortaliA5CFM2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains S4 RNA-binding domain.SAAS annotation
Contains SRNA-binding domain.SAAS annotation

Phylogenomic databases

eggNOGiCOG0564.
HOGENOMiHOG000275914.
KOiK06179.
OMAiEAPMDEQ.
OrthoDBiEOG6P070X.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
PROSITEiPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5CFM2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKITISNCLV TTRLDKFLKR KYSHLTQGVI ERGIRKGHIK VNDAKSKAKL
60 70 80 90 100
QVKDNDILTI ADYLTSCSNQ KHIKLKKKVK DNVGVKALAH KIVNNYKIAE
110 120 130 140 150
TSDYIIINKP ALLPTQGGSK ISLSLDDAIK YLNKSFYYDF KLVHRLDRET
160 170 180 190 200
TGLLIIAKNH GTAIKLSQAF LHHSIEKEYI AILQGVPSQL SGEIITNITK
210 220 230 240 250
TGDRMIETQN GGKVSITKYQ VKAISINSQL SLVSFIPVTG RTHQLRVHAA
260 270 280 290 300
KIGYPIIGDK KYNISNTYYN YSLKLHAAKI CIPKHLFGNQ RIYYAPLPYQ
310
FQQVISTFFD HN
Length:312
Mass (Da):35,285
Last modified:June 12, 2007 - v1
Checksum:iBE2DC437956860ED
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM494475 Genomic DNA. Translation: CAM81239.1.
RefSeqiWP_011945164.1. NC_009488.1.
YP_001249240.1. NC_009488.1.

Genome annotation databases

EnsemblBacteriaiCAM81239; CAM81239; OTBS_2144.
KEGGiots:OTBS_2144.
PATRICi22825859. VBIOriTsu83812_2334.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM494475 Genomic DNA. Translation: CAM81239.1.
RefSeqiWP_011945164.1. NC_009488.1.
YP_001249240.1. NC_009488.1.

3D structure databases

ProteinModelPortaliA5CFM2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi357244.OTBS_2144.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAM81239; CAM81239; OTBS_2144.
KEGGiots:OTBS_2144.
PATRICi22825859. VBIOriTsu83812_2334.

Phylogenomic databases

eggNOGiCOG0564.
HOGENOMiHOG000275914.
KOiK06179.
OMAiEAPMDEQ.
OrthoDBiEOG6P070X.

Enzyme and pathway databases

BioCyciOTSU357244:GCA5-2180-MONOMER.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
PROSITEiPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The Orientia tsutsugamushi genome reveals massive proliferation of conjugative type IV secretion system and host-cell interaction genes."
    Cho N.H., Kim H.R., Lee J.H., Kim S.Y., Kim J., Cha S., Kim S.Y., Darby A.C., Fuxelius H.H., Yin J., Kim J.H., Kim J., Lee S.J., Koh Y.S., Jang W.J., Park K.H., Andersson S.G.E., Choi M.S., Kim I.S.
    Proc. Natl. Acad. Sci. U.S.A. 104:7981-7986(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BoryongImported.

Entry informationi

Entry nameiA5CFM2_ORITB
AccessioniPrimary (citable) accession number: A5CFM2
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: May 27, 2015
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.