Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

A5CFM2

- A5CFM2_ORITB

UniProt

A5CFM2 - A5CFM2_ORITB

Protein

Pseudouridine synthase

Gene

rluC

Organism
Orientia tsutsugamushi (strain Boryong) (Rickettsia tsutsugamushi)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 48 (01 Oct 2014)
      Sequence version 1 (12 Jun 2007)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. lyase activity Source: UniProtKB-KW
    2. pseudouridine synthase activity Source: InterPro
    3. RNA binding Source: UniProtKB-KW

    GO - Biological processi

    1. pseudouridine synthesis Source: InterPro

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotation, LyaseImported

    Keywords - Ligandi

    RNA-bindingSAAS annotation

    Enzyme and pathway databases

    BioCyciOTSU357244:GCA5-2180-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
    Gene namesi
    Name:rluCImported
    Ordered Locus Names:OTBS_2144Imported
    OrganismiOrientia tsutsugamushi (strain Boryong) (Rickettsia tsutsugamushi)Imported
    Taxonomic identifieri357244 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeOrientia
    ProteomesiUP000001565: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi357244.OTBS_2144.

    Structurei

    3D structure databases

    ProteinModelPortaliA5CFM2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the pseudouridine synthase rluA family.UniRule annotation
    Contains S4 RNA-binding domain.SAAS annotation

    Phylogenomic databases

    eggNOGiCOG0564.
    HOGENOMiHOG000275914.
    KOiK06179.
    OMAiEAPMDEQ.
    OrthoDBiEOG6P070X.

    Family and domain databases

    Gene3Di3.10.290.10. 1 hit.
    InterProiIPR020103. PsdUridine_synth_cat_dom.
    IPR006224. PsdUridine_synth_RluC/D_CS.
    IPR006145. PsdUridine_synth_RsuA/RluD.
    IPR002942. S4_RNA-bd.
    [Graphical view]
    PfamiPF00849. PseudoU_synth_2. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view]
    SMARTiSM00363. S4. 1 hit.
    [Graphical view]
    SUPFAMiSSF55120. SSF55120. 1 hit.
    PROSITEiPS01129. PSI_RLU. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A5CFM2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKITISNCLV TTRLDKFLKR KYSHLTQGVI ERGIRKGHIK VNDAKSKAKL    50
    QVKDNDILTI ADYLTSCSNQ KHIKLKKKVK DNVGVKALAH KIVNNYKIAE 100
    TSDYIIINKP ALLPTQGGSK ISLSLDDAIK YLNKSFYYDF KLVHRLDRET 150
    TGLLIIAKNH GTAIKLSQAF LHHSIEKEYI AILQGVPSQL SGEIITNITK 200
    TGDRMIETQN GGKVSITKYQ VKAISINSQL SLVSFIPVTG RTHQLRVHAA 250
    KIGYPIIGDK KYNISNTYYN YSLKLHAAKI CIPKHLFGNQ RIYYAPLPYQ 300
    FQQVISTFFD HN 312
    Length:312
    Mass (Da):35,285
    Last modified:June 12, 2007 - v1
    Checksum:iBE2DC437956860ED
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM494475 Genomic DNA. Translation: CAM81239.1.
    RefSeqiYP_001249240.1. NC_009488.1.

    Genome annotation databases

    EnsemblBacteriaiCAM81239; CAM81239; OTBS_2144.
    GeneIDi5219186.
    KEGGiots:OTBS_2144.
    PATRICi22825859. VBIOriTsu83812_2334.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM494475 Genomic DNA. Translation: CAM81239.1 .
    RefSeqi YP_001249240.1. NC_009488.1.

    3D structure databases

    ProteinModelPortali A5CFM2.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 357244.OTBS_2144.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAM81239 ; CAM81239 ; OTBS_2144 .
    GeneIDi 5219186.
    KEGGi ots:OTBS_2144.
    PATRICi 22825859. VBIOriTsu83812_2334.

    Phylogenomic databases

    eggNOGi COG0564.
    HOGENOMi HOG000275914.
    KOi K06179.
    OMAi EAPMDEQ.
    OrthoDBi EOG6P070X.

    Enzyme and pathway databases

    BioCyci OTSU357244:GCA5-2180-MONOMER.

    Family and domain databases

    Gene3Di 3.10.290.10. 1 hit.
    InterProi IPR020103. PsdUridine_synth_cat_dom.
    IPR006224. PsdUridine_synth_RluC/D_CS.
    IPR006145. PsdUridine_synth_RsuA/RluD.
    IPR002942. S4_RNA-bd.
    [Graphical view ]
    Pfami PF00849. PseudoU_synth_2. 1 hit.
    PF01479. S4. 1 hit.
    [Graphical view ]
    SMARTi SM00363. S4. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55120. SSF55120. 1 hit.
    PROSITEi PS01129. PSI_RLU. 1 hit.
    PS50889. S4. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The Orientia tsutsugamushi genome reveals massive proliferation of conjugative type IV secretion system and host-cell interaction genes."
      Cho N.-H., Kim H.-R., Lee J.-H., Kim S.-Y., Kim J., Cha S., Kim S.-Y., Darby A.C., Fuxelius H.-H., Yin J., Kim J.H., Kim J., Lee S.J., Koh Y.-S., Jang W.-J., Park K.-H., Andersson S.G.E., Choi M.-S., Kim I.-S.
      Proc. Natl. Acad. Sci. U.S.A. 104:7981-7986(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BoryongImported.

    Entry informationi

    Entry nameiA5CFM2_ORITB
    AccessioniPrimary (citable) accession number: A5CFM2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 12, 2007
    Last sequence update: June 12, 2007
    Last modified: October 1, 2014
    This is version 48 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3