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A5CFM2 (A5CFM2_ORITB) Unreviewed, UniProtKB/TrEMBL

Last modified December 11, 2013. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length312 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Contains S4 RNA-binding domain. SAAS SAAS006145

Sequences

Sequence LengthMass (Da)Tools
A5CFM2 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: BE2DC437956860ED

FASTA31235,285
        10         20         30         40         50         60 
MKITISNCLV TTRLDKFLKR KYSHLTQGVI ERGIRKGHIK VNDAKSKAKL QVKDNDILTI 

        70         80         90        100        110        120 
ADYLTSCSNQ KHIKLKKKVK DNVGVKALAH KIVNNYKIAE TSDYIIINKP ALLPTQGGSK 

       130        140        150        160        170        180 
ISLSLDDAIK YLNKSFYYDF KLVHRLDRET TGLLIIAKNH GTAIKLSQAF LHHSIEKEYI 

       190        200        210        220        230        240 
AILQGVPSQL SGEIITNITK TGDRMIETQN GGKVSITKYQ VKAISINSQL SLVSFIPVTG 

       250        260        270        280        290        300 
RTHQLRVHAA KIGYPIIGDK KYNISNTYYN YSLKLHAAKI CIPKHLFGNQ RIYYAPLPYQ 

       310 
FQQVISTFFD HN 

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References

[1]"The Orientia tsutsugamushi genome reveals massive proliferation of conjugative type IV secretion system and host-cell interaction genes."
Cho N.-H., Kim H.-R., Lee J.-H., Kim S.-Y., Kim J., Cha S., Kim S.-Y., Darby A.C., Fuxelius H.-H., Yin J., Kim J.H., Kim J., Lee S.J., Koh Y.-S., Jang W.-J., Park K.-H., Andersson S.G.E., Choi M.-S., Kim I.-S.
Proc. Natl. Acad. Sci. U.S.A. 104:7981-7986(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Boryong EMBL CAM81239.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM494475 Genomic DNA. Translation: CAM81239.1.
RefSeqYP_001249240.1. NC_009488.1.

3D structure databases

ProteinModelPortalA5CFM2.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING357244.OTBS_2144.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAM81239; CAM81239; OTBS_2144.
GeneID5219186.
KEGGots:OTBS_2144.
PATRIC22825859. VBIOriTsu83812_2334.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0564.
HOGENOMHOG000275914.
KOK06179.
OMAEAPMDEQ.
OrthoDBEOG6P070X.
ProtClustDBCLSK2517043.

Enzyme and pathway databases

BioCycOTSU357244:GCA5-2180-MONOMER.

Family and domain databases

Gene3D3.10.290.10. 1 hit.
InterProIPR020103. PsdUridine_synth_cat_dom.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTSM00363. S4. 1 hit.
[Graphical view]
SUPFAMSSF55120. SSF55120. 1 hit.
PROSITEPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA5CFM2_ORITB
AccessionPrimary (citable) accession number: A5CFM2
Entry history
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: December 11, 2013
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)