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A5C718 (A5C718_VITVI) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 51. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Ribulose bisphosphate carboxylase small chain RuleBase RU003627

EC=4.1.1.39 RuleBase RU003627
Gene names
Ordered Locus Names:VIT_17s0000g03690 EMBL CCB43221.1
ORF Names:VITISV_022329 EMBL CAN64291.1
OrganismVitis vinifera (Grape) [Reference proteome] EMBL CAN64291.1
Taxonomic identifier29760 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsVitalesVitaceaeVitis

Protein attributes

Sequence length180 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site By similarity. RuleBase RU003627 SAAS SAAS024681

Catalytic activity

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O. SAAS SAAS024681 RuleBase RU003627

3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2. RuleBase RU003627 SAAS SAAS024681

Subunit structure

8 large chains + 8 small chains By similarity. RuleBase RU003627 SAAS SAAS024681

Sequence similarities

Belongs to the RuBisCO small chain family. RuleBase RU003627

Ontologies

Keywords
   Biological processCarbon dioxide fixation SAAS SAAS024681 RuleBase RU003627
Photorespiration SAAS SAAS024681 RuleBase RU003627
Photosynthesis SAAS SAAS024681 RuleBase RU003627
   Cellular componentChloroplast SAAS SAAS024681
Plastid
   Molecular functionLyase SAAS SAAS024681 RuleBase RU003627
Monooxygenase SAAS SAAS024681 RuleBase RU003627
Oxidoreductase
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processcarbon fixation

Inferred from electronic annotation. Source: UniProtKB-KW

chloroplast ribulose bisphosphate carboxylase complex biogenesis

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

photorespiration

Inferred from electronic annotation. Source: UniProtKB-KW

photosynthesis

Inferred from electronic annotation. Source: UniProtKB-KW

response to blue light

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

response to cold

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

response to far red light

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

response to red light

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Cellular_componentapoplast

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

cell wall

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

chloroplast envelope

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

chloroplast stroma

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

chloroplast thylakoid membrane

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

cytosolic ribosome

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

thylakoid lumen

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Molecular_functioncopper ion binding

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

monooxygenase activity

Inferred from electronic annotation. Source: UniProtKB-KW

ribulose-bisphosphate carboxylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A5C718 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: 1539435BA19E433D

FASTA18020,429
        10         20         30         40         50         60 
MASSMVSSAT VATINRATPA QANMVAPFTG LKSLSTFPGT RKANTDITSV ASNGGRVRCM 

        70         80         90        100        110        120 
KVWPTEGLMK FETLSYLPPL NDEQLCKEVD YLLRMKWIPC LEFTKLYPYP HREHNRSPGY 

       130        140        150        160        170        180 
YDGRYWTMWK LPMFGCTDSA QVIKEVQEAR TAYPDAHIRI IGFDNNRQVQ CIAFIAYKPS 

« Hide

References

« Hide 'large scale' references
[1]"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla."
The French-Italian Public Consortium for Grapevine Genome Characterization.
Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J. expand/collapse author list , Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F., Wincker P.
Nature 449:463-467(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Pinot noir / PN40024.
[2]"The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis vinifera L.): coping with a highly heterozygous genome."
Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T. expand/collapse author list , Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A., Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A., Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J., Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F., Viola R.
PLoS ONE 2:e1326-e1326(2007)
Cited for: NUCLEOTIDE SEQUENCE.
[3]"High quality assembly and annotation of grapevine genome."
Vitulo N., Olivier J., Forcato C., Albiero A., D'Angelo M., Zimbello R., Schiavon R., Rigobello C., Policriti A., Clepet C., Casagrande A., Choisne N., Vezzi A., Hugueney P., Horner D., Mica E., Cattonaro F., Del Fabbro C. expand/collapse author list , Alaux M., Di Gaspero G., Scalabrin S., Pesole G., Delledonne M., Pezzotti M., Pe E.M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F., Wincker P., Morgante M., Valle G.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM484546 Genomic DNA. Translation: CAN64291.1.
FN594950 Genomic DNA. Translation: CCB43221.1.
RefSeqXP_002276967.1. XM_002276931.2.
UniGeneVvi.236.

3D structure databases

ProteinModelPortalA5C718.
SMRA5C718. Positions 61-179.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING29760.GSVIVG00017679001.

Proteomic databases

PRIDEA5C718.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsVIT_17s0000g03690.t01; VIT_17s0000g03690.t01; VIT_17s0000g03690.
GeneID100267942.
KEGGvvi:100267942.

Phylogenomic databases

eggNOGCOG4451.
HOGENOMHOG000141332.
KOK01602.
ProtClustDBPLN02289.

Family and domain databases

Gene3D3.30.190.10. 1 hit.
InterProIPR024681. RuBisCO_sc.
IPR000894. RuBisCO_sc_dom.
IPR024680. RuBisCO_ssu_N.
[Graphical view]
PfamPF12338. RbcS. 1 hit.
PF00101. RuBisCO_small. 1 hit.
[Graphical view]
PRINTSPR00152. RUBISCOSMALL.
SUPFAMSSF55239. SSF55239. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA5C718_VITVI
AccessionPrimary (citable) accession number: A5C718
Entry history
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: March 19, 2014
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)