ID   A5BRD1_VITVI            Unreviewed;       954 AA.
AC   A5BRD1;
DT   12-JUN-2007, integrated into UniProtKB/TrEMBL.
DT   12-JUN-2007, sequence version 1.
DT   27-MAR-2024, entry version 49.
DE   RecName: Full=Reverse transcriptase Ty1/copia-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=VITISV_018727 {ECO:0000313|EMBL:CAN81398.1};
OS   Vitis vinifera (Grape).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; Vitales; Vitaceae; Viteae; Vitis.
OX   NCBI_TaxID=29760 {ECO:0000313|EMBL:CAN81398.1};
RN   [1] {ECO:0000313|EMBL:CAN81398.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D.,
RA   Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D.,
RA   Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T.,
RA   Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N.,
RA   Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A.,
RA   Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T.,
RA   Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
RA   Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J.,
RA   Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P.,
RA   Gutin A., Van de Peer Y., Salamini F., Viola R.;
RT   "The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis
RT   vinifera L.): coping with a highly heterozygous genome.";
RL   PLoS ONE 2:e1326-e1326(2007).
CC   -!- COFACTOR:
CC       Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC         Evidence={ECO:0000256|ARBA:ARBA00001933};
CC   -!- SIMILARITY: Belongs to the alliinase family.
CC       {ECO:0000256|ARBA:ARBA00006312}.
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DR   EMBL; AM468287; CAN81398.1; -; Genomic_DNA.
DR   GO; GO:0016846; F:carbon-sulfur lyase activity; IEA:InterPro.
DR   GO; GO:0008483; F:transaminase activity; IEA:UniProtKB-KW.
DR   CDD; cd00609; AAT_like; 1.
DR   Gene3D; 3.90.1150.10; Aspartate Aminotransferase, domain 1; 1.
DR   Gene3D; 2.10.25.30; EGF-like, alliinase; 1.
DR   Gene3D; 3.40.640.10; Type I PLP-dependent aspartate aminotransferase-like (Major domain); 1.
DR   InterPro; IPR006948; Alliinase_C.
DR   InterPro; IPR037029; Alliinase_N_sf.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR025314; DUF4219.
DR   InterPro; IPR015424; PyrdxlP-dep_Trfase.
DR   InterPro; IPR015421; PyrdxlP-dep_Trfase_major.
DR   InterPro; IPR015422; PyrdxlP-dep_Trfase_small.
DR   InterPro; IPR013103; RVT_2.
DR   PANTHER; PTHR35317:SF11; GAG-POL POLYPROTEIN; 1.
DR   PANTHER; PTHR35317; OS04G0629600 PROTEIN; 1.
DR   Pfam; PF04864; Alliinase_C; 1.
DR   Pfam; PF13961; DUF4219; 1.
DR   Pfam; PF14223; Retrotran_gag_2; 1.
DR   Pfam; PF07727; RVT_2; 2.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF53383; PLP-dependent transferases; 1.
PE   3: Inferred from homology;
KW   Aminotransferase {ECO:0000256|ARBA:ARBA00022576};
KW   Transferase {ECO:0000256|ARBA:ARBA00022576}.
FT   DOMAIN          15..41
FT                   /note="DUF4219"
FT                   /evidence="ECO:0000259|Pfam:PF13961"
FT   DOMAIN          457..501
FT                   /note="Reverse transcriptase Ty1/copia-type"
FT                   /evidence="ECO:0000259|Pfam:PF07727"
FT   DOMAIN          504..591
FT                   /note="Reverse transcriptase Ty1/copia-type"
FT                   /evidence="ECO:0000259|Pfam:PF07727"
FT   DOMAIN          659..949
FT                   /note="Alliinase C-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF04864"
SQ   SEQUENCE   954 AA;  108922 MW;  55B638C4E5E729E6 CRC64;
     MTSXVSLNAL APPVFDGINY QVWXVRIEAY LDASDLWEVV SEXYEVPPLS DNPTMAQIKL
     HNERRQRKSK AKASLFAAVS SIIFTRIMTL KTTNEIWNFL KKEYEGNEQV KGMQVLNLIR
     EFEMQRMKEL ETIKDYSDRL LSIVNKVRLL DIDFSDSRIV QKISITIPEK FETTISSLEN
     SKDVSSITLA KLLNALQTQE QRRLMRQEGS VEGAFQAISQ YKKEMQSNNN SNNNTQKFPS
     CPYCKKIQSF TKKVLVEAGC KMSQVCGCTN HMTYDQGLFK ELDKTVTSKA RIRNGAYLAI
     KGKGIVAIEG HTGYKVLFED NHCMIADAQG XEVFIVQMKG KSFALDLMQK EQVAIHKEES
     NTMLWHRRLR QFHHIALLFX KKNDLGEGLP ELEDLEFQEE NNNIDDEPVK ETXSLSNIYQ
     RCDVVIIEPT GYEEAATDKK WMDAINEEFK MIEKHXTWEL VDKPTHKRAI GVKWVYRTKL
     NYDGSINKHK ARLVVKGYAQ XFGGWNIHQM DVKSAFLNGY LEEEIFVEQL EGFIVKGMEE
     KVYLLKNALY GLKQAPRXWY NKIDSHLLGL GFTKSLSEFT LYFRKACDET LVKYAKEILK
     KFKMEEYNPS ATPMNQNEKF CKEDGAAKAD ERLYKTIIGC LMYLTTTRPD IMNVVSLLSS
     GDPLFLEPFW IQNAASSAML VAGWHRMSYT FTNQSLISRL LEDHIRKLHT TVGNAVTQGR
     FIVFGAGSTQ LLNAAVHALS PDNSSAPAKV VASFPFYTVY QLQTDFFRSV NFQFQGDASL
     WKNKSDSTLN FIEFVTSPNN PDGQLKKAVL QGPHVKTIHD HAYYWPHFTA IPAPADEDLM
     IFTLSKLTGH AGTRLGWALI KDEALYQRMS TYVKMNILGV SKDTQLRALK LVKVALEGSG
     KEIFEFGYTA MKERWERLSN ALSESKRFSI QEIAPQYCTF FKTVRGPSPG DSHS
//