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A5BBI6

- A5BBI6_VITVI

UniProt

A5BBI6 - A5BBI6_VITVI

Protein

Malate dehydrogenase

Gene

VITISV_004210

Organism
Vitis vinifera (Grape)
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 52 (01 Oct 2014)
      Sequence version 1 (12 Jun 2007)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    (S)-malate + NAD+ = oxaloacetate + NADH.UniRule annotation

    GO - Molecular functioni

    1. copper ion binding Source: EnsemblPlants/Gramene
    2. L-malate dehydrogenase activity Source: UniProtKB-EC

    GO - Biological processi

    1. cellular carbohydrate metabolic process Source: InterPro
    2. defense response to bacterium Source: EnsemblPlants/Gramene
    3. malate metabolic process Source: InterPro
    4. response to cadmium ion Source: EnsemblPlants/Gramene
    5. response to cold Source: EnsemblPlants/Gramene
    6. response to salt stress Source: EnsemblPlants/Gramene
    7. tricarboxylic acid cycle Source: UniProtKB-KW

    Keywords - Molecular functioni

    OxidoreductaseUniRule annotation

    Keywords - Biological processi

    Tricarboxylic acid cycleUniRule annotation

    Keywords - Ligandi

    NADUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Malate dehydrogenaseUniRule annotation (EC:1.1.1.37UniRule annotation)
    Gene namesi
    ORF Names:VITISV_004210Imported
    OrganismiVitis vinifera (Grape)Imported
    Taxonomic identifieri29760 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsVitalesVitaceaeVitis

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: EnsemblPlants/Gramene
    2. cell wall Source: EnsemblPlants/Gramene
    3. chloroplast Source: EnsemblPlants/Gramene
    4. membrane Source: EnsemblPlants/Gramene

    PTM / Processingi

    Proteomic databases

    PRIDEiA5BBI6.

    Interactioni

    Protein-protein interaction databases

    STRINGi29760.GSVIVG00027787001.

    Structurei

    3D structure databases

    ProteinModelPortaliA5BBI6.
    SMRiA5BBI6. Positions 39-347.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the LDH/MDH superfamily. MDH type 1 family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0039.
    HOGENOMiHOG000213792.
    KOiK00026.

    Family and domain databases

    Gene3Di3.40.50.720. 1 hit.
    3.90.110.10. 1 hit.
    InterProiIPR001557. L-lactate/malate_DH.
    IPR022383. Lactate/malate_DH_C.
    IPR001236. Lactate/malate_DH_N.
    IPR015955. Lactate_DH/Glyco_Ohase_4_C.
    IPR001252. Malate_DH_AS.
    IPR010097. Malate_DH_type1.
    IPR016040. NAD(P)-bd_dom.
    [Graphical view]
    PANTHERiPTHR11540. PTHR11540. 1 hit.
    PfamiPF02866. Ldh_1_C. 1 hit.
    PF00056. Ldh_1_N. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000102. Lac_mal_DH. 1 hit.
    SUPFAMiSSF56327. SSF56327. 1 hit.
    TIGRFAMsiTIGR01772. MDH_euk_gproteo. 1 hit.
    PROSITEiPS00068. MDH. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A5BBI6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKASMAMRSV RSALRSGSSS SPSHFLRRCY CSESVPERKV TILGAAGGIG    50
    QPLALLMKIN PLVSNLALYD IAGTPGVAAD VSHVNTISQV AGFMGEDQLG 100
    KALEGSDVVI IPAGVPRKPG MTRDDLFNIN AGIVKSLCIA IAKYCPNALV 150
    NVISNPVNST VPIAAEVFKK AGTFDEKKLF GVTTLDVVRA KTFYAAKAKV 200
    PVSEVNVPVV GGHAGITILP LFSQTTPKSN NLSDEDIQAL TKRTQDGGTE 250
    VVEAKAGKGS ATLSMAYAGA IFADACLKGL NGVPEVVECS YVQSSITELP 300
    FFSSKVRLGK NGVEEVLGLG PLSDYEKEGL EKLKPDLKAS IEKGIKFAAQ 350
    S 351
    Length:351
    Mass (Da):36,788
    Last modified:June 12, 2007 - v1
    Checksum:iECDFD001A6ABCFAC
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM453488 Genomic DNA. Translation: CAN83064.1.
    RefSeqiXP_002285356.1. XM_002285320.2.
    UniGeneiVvi.1249.

    Genome annotation databases

    GeneIDi100253724.
    KEGGivvi:100253724.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM453488 Genomic DNA. Translation: CAN83064.1 .
    RefSeqi XP_002285356.1. XM_002285320.2.
    UniGenei Vvi.1249.

    3D structure databases

    ProteinModelPortali A5BBI6.
    SMRi A5BBI6. Positions 39-347.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 29760.GSVIVG00027787001.

    Proteomic databases

    PRIDEi A5BBI6.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 100253724.
    KEGGi vvi:100253724.

    Phylogenomic databases

    eggNOGi COG0039.
    HOGENOMi HOG000213792.
    KOi K00026.

    Family and domain databases

    Gene3Di 3.40.50.720. 1 hit.
    3.90.110.10. 1 hit.
    InterProi IPR001557. L-lactate/malate_DH.
    IPR022383. Lactate/malate_DH_C.
    IPR001236. Lactate/malate_DH_N.
    IPR015955. Lactate_DH/Glyco_Ohase_4_C.
    IPR001252. Malate_DH_AS.
    IPR010097. Malate_DH_type1.
    IPR016040. NAD(P)-bd_dom.
    [Graphical view ]
    PANTHERi PTHR11540. PTHR11540. 1 hit.
    Pfami PF02866. Ldh_1_C. 1 hit.
    PF00056. Ldh_1_N. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000102. Lac_mal_DH. 1 hit.
    SUPFAMi SSF56327. SSF56327. 1 hit.
    TIGRFAMsi TIGR01772. MDH_euk_gproteo. 1 hit.
    PROSITEi PS00068. MDH. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis vinifera L.): coping with a highly heterozygous genome."
      Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T.
      , Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A., Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A., Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J., Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F., Viola R.
      PLoS ONE 2:e1326-e1326(2007)
      Cited for: NUCLEOTIDE SEQUENCE.

    Entry informationi

    Entry nameiA5BBI6_VITVI
    AccessioniPrimary (citable) accession number: A5BBI6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 12, 2007
    Last sequence update: June 12, 2007
    Last modified: October 1, 2014
    This is version 52 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)