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A5B5N0 (A5B5N0_VITVI) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 48. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:VIT_18s0001g10170 EMBL CCB45818.1
ORF Names:VITISV_017035 EMBL CAN76464.1
OrganismVitis vinifera (Grape) [Reference proteome] EMBL CAN76464.1
Taxonomic identifier29760 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsVitalesVitaceaeVitis

Protein attributes

Sequence length640 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains PABC domain. SAAS SAAS002004

Contains RRM (RNA recognition motif) domains. SAAS SAAS006515

Ontologies

Sequences

Sequence LengthMass (Da)Tools
A5B5N0 [UniParc].

Last modified June 12, 2007. Version 1.
Checksum: F11CEFC3BCC09955

FASTA64070,145
        10         20         30         40         50         60 
MAQIQAAVAG PNGVANTASL YVGDLDVNIT DSQLYDLFIQ AGQVLSVRVC RDLSTRRSLG 

        70         80         90        100        110        120 
YGYVNYSNPQ DAARALDLLN FTPLNGKPIR IMYSHRDPSI RKSGTANIFI KNLDKSIDNK 

       130        140        150        160        170        180 
ALHDTFSAFG NILSCKIATD PSGQSKGYGF VQFDNEESAQ NAIDKLNGML INDKQVYVGQ 

       190        200        210        220        230        240 
FLRKQERETA LNKTKFNNVY VKNLSESTTE EDLKNIFGEF GIITSVVVMR DGDGKSKCFG 

       250        260        270        280        290        300 
FVNFENADDA AEAVEALNGK KFDEKEWYVG KAQKKYEREL ELKGRFEQSM KEVVDKFQGV 

       310        320        330        340        350        360 
NLYIKNLDDS IGDDKLKELF SEFGTITSCK VMRDPSGISR GSGFVAFSTS EEASRALTEM 

       370        380        390        400        410        420 
NGKMVVSKPL YVALAQRKEE RRARLQAQFS QMRPVSMAPS VAPRMPMYPP GAPGLGQQLF 

       430        440        450        460        470        480 
YGQGPPAIIP PQAGFGYQQQ LVPGMRPGGA PMPNFFVPLV QQGQQGQRPG GRRGAGPVQQ 

       490        500        510        520        530        540 
NQQPVPLMQQ QMLPRGGRVY RYPPGRNMPD VPMPGVAGGM LSIPYDMGGV PLRDAAIGQP 

       550        560        570        580        590        600 
MPISALASAL ANATPDQQRT MLGESLYPLV DQLEHEMAAK VTGMLLEMDQ TEVLHLLESP 

       610        620        630        640 
EALKSKVAEA MDVLRNVAQQ QANSPTEQLA SLSLNDSLVP 

« Hide

References

« Hide 'large scale' references
[1]"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla."
The French-Italian Public Consortium for Grapevine Genome Characterization.
Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J. expand/collapse author list , Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F., Wincker P.
Nature 449:463-467(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Pinot noir / PN40024.
[2]"The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis vinifera L.): coping with a highly heterozygous genome."
Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T. expand/collapse author list , Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A., Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A., Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J., Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F., Viola R.
PLoS ONE 2:e1326-e1326(2007)
Cited for: NUCLEOTIDE SEQUENCE.
[3]"High quality assembly and annotation of grapevine genome."
Vitulo N., Olivier J., Forcato C., Albiero A., D'Angelo M., Zimbello R., Schiavon R., Rigobello C., Policriti A., Clepet C., Casagrande A., Choisne N., Vezzi A., Hugueney P., Horner D., Mica E., Cattonaro F., Del Fabbro C. expand/collapse author list , Alaux M., Di Gaspero G., Scalabrin S., Pesole G., Delledonne M., Pezzotti M., Pe E.M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F., Wincker P., Morgante M., Valle G.
Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM447494 Genomic DNA. Translation: CAN76464.1.
FN595227 Genomic DNA. Translation: CCB45818.1.
RefSeqXP_002284923.1. XM_002284887.2.
UniGeneVvi.7872.

3D structure databases

ProteinModelPortalA5B5N0.
SMRA5B5N0. Positions 18-187, 294-383, 542-620.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING29760.GSVIVG00014861001.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsVIT_18s0001g10170.t01; VIT_18s0001g10170.t01; VIT_18s0001g10170.
GeneID100255846.
KEGGvvi:100255846.

Phylogenomic databases

eggNOGNOG311801.
KOK13126.
ProtClustDBCLSN2714507.

Family and domain databases

Gene3D1.10.1900.10. 1 hit.
3.30.70.330. 4 hits.
InterProIPR012677. Nucleotide-bd_a/b_plait.
IPR006515. PABP_1234.
IPR002004. PABP_HYD.
IPR000504. RRM_dom.
[Graphical view]
PfamPF00658. PABP. 1 hit.
PF00076. RRM_1. 4 hits.
[Graphical view]
SMARTSM00517. PolyA. 1 hit.
SM00360. RRM. 4 hits.
[Graphical view]
SUPFAMSSF63570. SSF63570. 1 hit.
TIGRFAMsTIGR01628. PABP-1234. 1 hit.
PROSITEPS51309. PABC. 1 hit.
PS50102. RRM. 4 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA5B5N0_VITVI
AccessionPrimary (citable) accession number: A5B5N0
Entry history
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: March 19, 2014
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)