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Protein

Polyadenylate-binding protein

Gene

VIT_18s0001g10170

Organism
Vitis vinifera (Grape)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Binds the poly(A) tail of mRNA.UniRule annotation

GO - Molecular functioni

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Polyadenylate-binding proteinUniRule annotation
Short name:
PABPUniRule annotation
Gene namesi
Ordered Locus Names:VIT_18s0001g10170Imported
ORF Names:VITISV_017035Imported
OrganismiVitis vinifera (Grape)Imported
Taxonomic identifieri29760 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsVitalesVitaceaeVitis
Proteomesi
  • UP000009183 Componenti: Chromosome 18

Subcellular locationi

Keywords - Cellular componenti

CytoplasmUniRule annotation

Expressioni

Gene expression databases

ExpressionAtlasiA5B5N0 baseline and differential

Interactioni

Protein-protein interaction databases

STRINGi29760.VIT_18s0001g10170.t01

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini18 – 96RRMInterPro annotationAdd BLAST79
Domaini106 – 178RRMInterPro annotationAdd BLAST73
Domaini197 – 274RRMInterPro annotationAdd BLAST78
Domaini300 – 377RRMInterPro annotationAdd BLAST78
Domaini542 – 619PABCInterPro annotationAdd BLAST78

Sequence similaritiesi

Belongs to the polyadenylate-binding protein type-1 family.UniRule annotation

Keywords - Domaini

RepeatSAAS annotation

Phylogenomic databases

eggNOGiKOG0123 Eukaryota
ENOG410XR5X LUCA
KOiK13126
OrthoDBiEOG093606N5

Family and domain databases

Gene3Di3.30.70.330, 4 hits
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR036053 PABP-dom
IPR006515 PABP_1234
IPR002004 PABP_HYD
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
IPR003954 RRM_dom_euk
PfamiView protein in Pfam
PF00658 PABP, 1 hit
PF00076 RRM_1, 4 hits
SMARTiView protein in SMART
SM00517 PolyA, 1 hit
SM00360 RRM, 4 hits
SM00361 RRM_1, 4 hits
SUPFAMiSSF54928 SSF54928, 2 hits
SSF63570 SSF63570, 1 hit
TIGRFAMsiTIGR01628 PABP-1234, 1 hit
PROSITEiView protein in PROSITE
PS51309 PABC, 1 hit
PS50102 RRM, 4 hits

Sequencei

Sequence statusi: Complete.

A5B5N0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAQIQAAVAG PNGVANTASL YVGDLDVNIT DSQLYDLFIQ AGQVLSVRVC
60 70 80 90 100
RDLSTRRSLG YGYVNYSNPQ DAARALDLLN FTPLNGKPIR IMYSHRDPSI
110 120 130 140 150
RKSGTANIFI KNLDKSIDNK ALHDTFSAFG NILSCKIATD PSGQSKGYGF
160 170 180 190 200
VQFDNEESAQ NAIDKLNGML INDKQVYVGQ FLRKQERETA LNKTKFNNVY
210 220 230 240 250
VKNLSESTTE EDLKNIFGEF GIITSVVVMR DGDGKSKCFG FVNFENADDA
260 270 280 290 300
AEAVEALNGK KFDEKEWYVG KAQKKYEREL ELKGRFEQSM KEVVDKFQGV
310 320 330 340 350
NLYIKNLDDS IGDDKLKELF SEFGTITSCK VMRDPSGISR GSGFVAFSTS
360 370 380 390 400
EEASRALTEM NGKMVVSKPL YVALAQRKEE RRARLQAQFS QMRPVSMAPS
410 420 430 440 450
VAPRMPMYPP GAPGLGQQLF YGQGPPAIIP PQAGFGYQQQ LVPGMRPGGA
460 470 480 490 500
PMPNFFVPLV QQGQQGQRPG GRRGAGPVQQ NQQPVPLMQQ QMLPRGGRVY
510 520 530 540 550
RYPPGRNMPD VPMPGVAGGM LSIPYDMGGV PLRDAAIGQP MPISALASAL
560 570 580 590 600
ANATPDQQRT MLGESLYPLV DQLEHEMAAK VTGMLLEMDQ TEVLHLLESP
610 620 630 640
EALKSKVAEA MDVLRNVAQQ QANSPTEQLA SLSLNDSLVP
Length:640
Mass (Da):70,145
Last modified:June 12, 2007 - v1
Checksum:iF11CEFC3BCC09955
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM447494 Genomic DNA Translation: CAN76464.1
FN595227 Genomic DNA Translation: CCB45818.1
RefSeqiXP_002284923.1, XM_002284887.4
UniGeneiVvi.7872

Genome annotation databases

EnsemblPlantsiVIT_18s0001g10170.t01; VIT_18s0001g10170.t01; VIT_18s0001g10170
GeneIDi100255846
GrameneiVIT_18s0001g10170.t01; VIT_18s0001g10170.t01; VIT_18s0001g10170
KEGGivvi:100255846

Similar proteinsi

Entry informationi

Entry nameiA5B5N0_VITVI
AccessioniPrimary (citable) accession number: A5B5N0
Entry historyiIntegrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: March 28, 2018
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health