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Protein

Polyadenylate-binding protein

Gene

VIT_18s0001g10170

Organism
Vitis vinifera (Grape)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Binds the poly(A) tail of mRNA.UniRule annotation

GO - Molecular functioni

  1. nucleotide binding Source: InterPro
  2. RNA binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

RNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Polyadenylate-binding proteinUniRule annotation
Short name:
PABPUniRule annotation
Gene namesi
Ordered Locus Names:VIT_18s0001g10170Imported
ORF Names:VITISV_017035Imported
OrganismiVitis vinifera (Grape)Imported
Taxonomic identifieri29760 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsVitalesVitaceaeVitis
ProteomesiUP000009183 Componenti: Chromosome 18

Subcellular locationi

Cytoplasm UniRule annotation

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi29760.GSVIVG00014861001.

Structurei

3D structure databases

ProteinModelPortaliA5B5N0.
SMRiA5B5N0. Positions 18-187, 294-383, 542-620.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the polyadenylate-binding protein type-1 family.UniRule annotation
Contains 1 PABC domain.UniRule annotation
Contains 4 RRM (RNA recognition motif) domains.UniRule annotation

Keywords - Domaini

RepeatSAAS annotation

Phylogenomic databases

eggNOGiNOG311801.
InParanoidiA5B5N0.
KOiK13126.

Family and domain databases

Gene3Di1.10.1900.10. 1 hit.
3.30.70.330. 4 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR006515. PABP_1234.
IPR002004. PABP_HYD.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00658. PABP. 1 hit.
PF00076. RRM_1. 4 hits.
[Graphical view]
SMARTiSM00517. PolyA. 1 hit.
SM00360. RRM. 4 hits.
[Graphical view]
SUPFAMiSSF63570. SSF63570. 1 hit.
TIGRFAMsiTIGR01628. PABP-1234. 1 hit.
PROSITEiPS51309. PABC. 1 hit.
PS50102. RRM. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A5B5N0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAQIQAAVAG PNGVANTASL YVGDLDVNIT DSQLYDLFIQ AGQVLSVRVC
60 70 80 90 100
RDLSTRRSLG YGYVNYSNPQ DAARALDLLN FTPLNGKPIR IMYSHRDPSI
110 120 130 140 150
RKSGTANIFI KNLDKSIDNK ALHDTFSAFG NILSCKIATD PSGQSKGYGF
160 170 180 190 200
VQFDNEESAQ NAIDKLNGML INDKQVYVGQ FLRKQERETA LNKTKFNNVY
210 220 230 240 250
VKNLSESTTE EDLKNIFGEF GIITSVVVMR DGDGKSKCFG FVNFENADDA
260 270 280 290 300
AEAVEALNGK KFDEKEWYVG KAQKKYEREL ELKGRFEQSM KEVVDKFQGV
310 320 330 340 350
NLYIKNLDDS IGDDKLKELF SEFGTITSCK VMRDPSGISR GSGFVAFSTS
360 370 380 390 400
EEASRALTEM NGKMVVSKPL YVALAQRKEE RRARLQAQFS QMRPVSMAPS
410 420 430 440 450
VAPRMPMYPP GAPGLGQQLF YGQGPPAIIP PQAGFGYQQQ LVPGMRPGGA
460 470 480 490 500
PMPNFFVPLV QQGQQGQRPG GRRGAGPVQQ NQQPVPLMQQ QMLPRGGRVY
510 520 530 540 550
RYPPGRNMPD VPMPGVAGGM LSIPYDMGGV PLRDAAIGQP MPISALASAL
560 570 580 590 600
ANATPDQQRT MLGESLYPLV DQLEHEMAAK VTGMLLEMDQ TEVLHLLESP
610 620 630 640
EALKSKVAEA MDVLRNVAQQ QANSPTEQLA SLSLNDSLVP
Length:640
Mass (Da):70,145
Last modified:June 12, 2007 - v1
Checksum:iF11CEFC3BCC09955
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM447494 Genomic DNA. Translation: CAN76464.1.
FN595227 Genomic DNA. Translation: CCB45818.1.
RefSeqiXP_002284923.1. XM_002284887.3.
XP_010664560.1. XM_010666258.1.
UniGeneiVvi.7872.

Genome annotation databases

EnsemblPlantsiVIT_18s0001g10170.t01; VIT_18s0001g10170.t01; VIT_18s0001g10170.
GeneIDi100255846.
KEGGivvi:100255846.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM447494 Genomic DNA. Translation: CAN76464.1.
FN595227 Genomic DNA. Translation: CCB45818.1.
RefSeqiXP_002284923.1. XM_002284887.3.
XP_010664560.1. XM_010666258.1.
UniGeneiVvi.7872.

3D structure databases

ProteinModelPortaliA5B5N0.
SMRiA5B5N0. Positions 18-187, 294-383, 542-620.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi29760.GSVIVG00014861001.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiVIT_18s0001g10170.t01; VIT_18s0001g10170.t01; VIT_18s0001g10170.
GeneIDi100255846.
KEGGivvi:100255846.

Phylogenomic databases

eggNOGiNOG311801.
InParanoidiA5B5N0.
KOiK13126.

Family and domain databases

Gene3Di1.10.1900.10. 1 hit.
3.30.70.330. 4 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR006515. PABP_1234.
IPR002004. PABP_HYD.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00658. PABP. 1 hit.
PF00076. RRM_1. 4 hits.
[Graphical view]
SMARTiSM00517. PolyA. 1 hit.
SM00360. RRM. 4 hits.
[Graphical view]
SUPFAMiSSF63570. SSF63570. 1 hit.
TIGRFAMsiTIGR01628. PABP-1234. 1 hit.
PROSITEiPS51309. PABC. 1 hit.
PS50102. RRM. 4 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla."
    The French-Italian Public Consortium for Grapevine Genome Characterization.
    Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.
    , Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F., Wincker P.
    Nature 449:463-467(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Pinot noir / PN40024Imported.
  2. "The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis vinifera L.): coping with a highly heterozygous genome."
    Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T.
    , Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A., Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A., Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J., Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F., Viola R.
    PLoS ONE 2:e1326-e1326(2006)
    Cited for: NUCLEOTIDE SEQUENCE.
  3. Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiA5B5N0_VITVI
AccessioniPrimary (citable) accession number: A5B5N0
Entry historyi
Integrated into UniProtKB/TrEMBL: June 12, 2007
Last sequence update: June 12, 2007
Last modified: March 4, 2015
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.