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A5B5N0

- A5B5N0_VITVI

UniProt

A5B5N0 - A5B5N0_VITVI

Protein
Submitted name:

Putative uncharacterized protein

Gene

VIT_18s0001g10170

Organism
Vitis vinifera (Grape)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 50 (01 Oct 2014)
      Sequence version 1 (12 Jun 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. nucleotide binding Source: InterPro
    2. RNA binding Source: UniProtKB-KW

    Keywords - Ligandi

    RNA-bindingSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative uncharacterized proteinImported
    Gene namesi
    Ordered Locus Names:VIT_18s0001g10170Imported
    ORF Names:VITISV_017035Imported
    OrganismiVitis vinifera (Grape)Imported
    Taxonomic identifieri29760 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsVitalesVitaceaeVitis
    ProteomesiUP000009183: Chromosome 18

    Interactioni

    Protein-protein interaction databases

    STRINGi29760.GSVIVG00014861001.

    Structurei

    3D structure databases

    SMRiA5B5N0. Positions 18-187, 294-383, 542-620.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains PABC domain.SAAS annotation
    Contains RRM (RNA recognition motif) domains.SAAS annotation

    Keywords - Domaini

    RepeatSAAS annotation

    Phylogenomic databases

    eggNOGiNOG311801.
    KOiK13126.

    Family and domain databases

    Gene3Di1.10.1900.10. 1 hit.
    3.30.70.330. 4 hits.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR006515. PABP_1234.
    IPR002004. PABP_HYD.
    IPR000504. RRM_dom.
    [Graphical view]
    PfamiPF00658. PABP. 1 hit.
    PF00076. RRM_1. 4 hits.
    [Graphical view]
    SMARTiSM00517. PolyA. 1 hit.
    SM00360. RRM. 4 hits.
    [Graphical view]
    SUPFAMiSSF63570. SSF63570. 1 hit.
    TIGRFAMsiTIGR01628. PABP-1234. 1 hit.
    PROSITEiPS51309. PABC. 1 hit.
    PS50102. RRM. 4 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A5B5N0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAQIQAAVAG PNGVANTASL YVGDLDVNIT DSQLYDLFIQ AGQVLSVRVC    50
    RDLSTRRSLG YGYVNYSNPQ DAARALDLLN FTPLNGKPIR IMYSHRDPSI 100
    RKSGTANIFI KNLDKSIDNK ALHDTFSAFG NILSCKIATD PSGQSKGYGF 150
    VQFDNEESAQ NAIDKLNGML INDKQVYVGQ FLRKQERETA LNKTKFNNVY 200
    VKNLSESTTE EDLKNIFGEF GIITSVVVMR DGDGKSKCFG FVNFENADDA 250
    AEAVEALNGK KFDEKEWYVG KAQKKYEREL ELKGRFEQSM KEVVDKFQGV 300
    NLYIKNLDDS IGDDKLKELF SEFGTITSCK VMRDPSGISR GSGFVAFSTS 350
    EEASRALTEM NGKMVVSKPL YVALAQRKEE RRARLQAQFS QMRPVSMAPS 400
    VAPRMPMYPP GAPGLGQQLF YGQGPPAIIP PQAGFGYQQQ LVPGMRPGGA 450
    PMPNFFVPLV QQGQQGQRPG GRRGAGPVQQ NQQPVPLMQQ QMLPRGGRVY 500
    RYPPGRNMPD VPMPGVAGGM LSIPYDMGGV PLRDAAIGQP MPISALASAL 550
    ANATPDQQRT MLGESLYPLV DQLEHEMAAK VTGMLLEMDQ TEVLHLLESP 600
    EALKSKVAEA MDVLRNVAQQ QANSPTEQLA SLSLNDSLVP 640
    Length:640
    Mass (Da):70,145
    Last modified:June 12, 2007 - v1
    Checksum:iF11CEFC3BCC09955
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM447494 Genomic DNA. Translation: CAN76464.1.
    FN595227 Genomic DNA. Translation: CCB45818.1.
    RefSeqiXP_002284923.1. XM_002284887.2.
    UniGeneiVvi.7872.

    Genome annotation databases

    EnsemblPlantsiVIT_18s0001g10170.t01; VIT_18s0001g10170.t01; VIT_18s0001g10170.
    GeneIDi100255846.
    KEGGivvi:100255846.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM447494 Genomic DNA. Translation: CAN76464.1 .
    FN595227 Genomic DNA. Translation: CCB45818.1 .
    RefSeqi XP_002284923.1. XM_002284887.2.
    UniGenei Vvi.7872.

    3D structure databases

    SMRi A5B5N0. Positions 18-187, 294-383, 542-620.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 29760.GSVIVG00014861001.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi VIT_18s0001g10170.t01 ; VIT_18s0001g10170.t01 ; VIT_18s0001g10170 .
    GeneIDi 100255846.
    KEGGi vvi:100255846.

    Phylogenomic databases

    eggNOGi NOG311801.
    KOi K13126.

    Family and domain databases

    Gene3Di 1.10.1900.10. 1 hit.
    3.30.70.330. 4 hits.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR006515. PABP_1234.
    IPR002004. PABP_HYD.
    IPR000504. RRM_dom.
    [Graphical view ]
    Pfami PF00658. PABP. 1 hit.
    PF00076. RRM_1. 4 hits.
    [Graphical view ]
    SMARTi SM00517. PolyA. 1 hit.
    SM00360. RRM. 4 hits.
    [Graphical view ]
    SUPFAMi SSF63570. SSF63570. 1 hit.
    TIGRFAMsi TIGR01628. PABP-1234. 1 hit.
    PROSITEi PS51309. PABC. 1 hit.
    PS50102. RRM. 4 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla."
      The French-Italian Public Consortium for Grapevine Genome Characterization.
      Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.
      , Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F., Wincker P.
      Nature 449:463-467(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Pinot noir / PN40024Imported.
    2. "The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis vinifera L.): coping with a highly heterozygous genome."
      Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T.
      , Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A., Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A., Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J., Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F., Viola R.
      PLoS ONE 2:e1326-e1326(2007)
      Cited for: NUCLEOTIDE SEQUENCE.
    3. Cited for: NUCLEOTIDE SEQUENCE.

    Entry informationi

    Entry nameiA5B5N0_VITVI
    AccessioniPrimary (citable) accession number: A5B5N0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 12, 2007
    Last sequence update: June 12, 2007
    Last modified: October 1, 2014
    This is version 50 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3