Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized protein YkfM

Gene

ykfM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoCyc
  • response to antibiotic Source: EcoCyc

Enzyme and pathway databases

BioCyciEcoCyc:MONOMER0-2812.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YkfM
Gene namesi
Name:ykfM
Ordered Locus Names:b4586
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14451. ykfM.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei10 – 30HelicalSequence analysisAdd BLAST21
Transmembranei52 – 72HelicalSequence analysisAdd BLAST21
Transmembranei96 – 116HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003117741 – 159Uncharacterized protein YkfMAdd BLAST159

Proteomic databases

PaxDbiA5A605.
PRIDEiA5A605.

Structurei

3D structure databases

ProteinModelPortaliA5A605.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

HOGENOMiHOG000068955.

Sequencei

Sequence statusi: Complete.

A5A605-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLHVKLKEF LSMFFMAILF FPAFNASLFF TGVKPLYSII KCSTEIFYDW
60 70 80 90 100
RMLILCFGFM SFSFLNIHVI LLTIIKSFLI KKTKVVNFAT DITIQLTLIF
110 120 130 140 150
LLIAIVIAPL IAPFVTGYVN TNYHPCGNNT GIFPGAIYIK NGMKCNNGYI

SRKEDSAVK
Length:159
Mass (Da):18,118
Last modified:September 11, 2007 - v1
Checksum:i147435AC28DD6BBA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U70214 Genomic DNA. Translation: AAB08639.1.
U00096 Genomic DNA. Translation: ABP93434.1.
RefSeqiWP_001236645.1. NZ_LN832404.1.
YP_001165307.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiABP93434; ABP93434; b4586.
GeneIDi5061498.
KEGGieco:b4586.
PATRICifig|83333.103.peg.967.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiYKFM_ECOLI
AccessioniPrimary (citable) accession number: A5A605
Secondary accession number(s): P71282
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 4, 2007
Last sequence update: September 11, 2007
Last modified: July 5, 2017
This is version 41 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene