Lymphoid enhancer binding factor 1 short isoform - Rattus norvegicus (Rat)

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Unreviewed, UniProtKB/TrEMBL A5A1E7 (A5A1E7_RAT)

Last modified January 19, 2010. Version 16. History...

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Names and origin · Protein attributes · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information

Names and origin

Protein names

Submitted name:
Lymphoid enhancer binding factor 1 short isoform EMBL ABP57804.1

Gene names

Name:

Lef1 EMBL ABP57804.1

Organism

Rattus norvegicus (Rat) EMBL ABP57804.1

Taxonomic identifier

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	127 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level.

Ontologies

Gene Ontology (GO)
Biological process	cell adhesion Inferred from expression pattern. Source: RGD kidney development Inferred from expression pattern. Source: RGD response to lithium ion Inferred from expression pattern. Source: RGD response to organic cyclic substance Inferred from expression pattern. Source: RGD skin development Inferred from expression pattern. Source: RGD
Cellular component	nucleus Inferred from direct assay. Source: RGD
Molecular function	DNA binding Inferred from electronic annotation. Source: InterPro protein binding Inferred from physical interaction. Source: RGD
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Experimental info

Non-terminal residue

1

EMBL ABP57804.1

Non-terminal residue

1

EMBL ABP57804.1

Sequences

Sequence

Length

Mass (Da)

Tools

A5A1E7-1 [UniParc].

Last modified May 29, 2007. Version 1.
Checksum: 73CA57D2DF13E9D1
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127

14,147

        10         20         30         40         50         60 
IPSEVNPKQG MSRHPPAPEM PTFYPLSPGG VGQITPPLGW FSHHMIPGPP GPHTTGIPHP 

        70         80         90        100        110        120 
AIVTPQVKQE HPHTDSDLMH VKPQHEQRKE QEPKRPHIKK PLNAFMLYMK EMRANVVAEC 


TLKESAA

References

[1]	"Canonical Wnt signaling maintains the quiescent stage of hepatic stellate cells." Kordes C., Sawitza I., Haussinger D. Biochem. Biophys. Res. Commun. 367:116-123(2008) [PubMed: 18158920] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Wistar EMBL ABP57804.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	EF519319 mRNA. Translation: ABP57804.1.
IPI	IPI00392795.
UniGene	Rn.21926
3D structure databases
SMR	A5A1E7. Positions 97-127.
ModBase	Search...
Protein-protein interaction databases
STRING	A5A1E7.
Genome annotation databases
Ensembl	ENSRNOT00000034793; ENSRNOP00000035157; ENSRNOG00000010121; Rattus norvegicus. [Genome view]
Phylogenomic databases
eggNOG	roNOG08331.
Gene expression databases
Genevestigator	A5A1E7.
Family and domain databases
InterPro	IPR013558. CTNNB1_bd_N. IPR000910. HMG_HMG1/HMG2. IPR009071. HMG_superfamily. [Graphical view]
Gene3D	G3DSA:1.10.30.10. HMG-box. 1 hit.
Pfam	PF08347. CTNNB1_binding. 1 hit. PF00505. HMG_box. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A5A1E7_RAT

Accession

Primary (citable) accession number: A5A1E7

Entry history

Integrated into UniProtKB/TrEMBL:	May 29, 2007
Last sequence update:	May 29, 2007
Last modified:	January 19, 2010
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names and origin · Protein attributes · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information