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A4Z011 (A4Z011_BRASO) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative ATP-dependent DNA ligase EMBL CAL79487.1
EC=6.5.1.1 EMBL CAL79487.1
Gene names
Ordered Locus Names:BRADO5823
OrganismBradyrhizobium sp. (strain ORS278) [Complete proteome] [HAMAP]
Taxonomic identifier114615 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Bradyrhizobium

Protein attributes

Sequence length904 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CAL79487.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A4Z011 [UniParc].

Last modified May 29, 2007. Version 1.
Checksum: AD28102C5609AF33

FASTA90499,183
        10         20         30         40         50         60 
MALKKLSTYR KKRDFEKTAE PSGDARIAPA ARPRFVIQKH DATRLHYDLR LEFDGVFKSW 

        70         80         90        100        110        120 
AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPEGEYGG GTVMLWDRGY WESDDPERGF 

       130        140        150        160        170        180 
TKGDLKFTLE GEKLHGSWVL VRMRHDRTGG KRTNWLLIKH RDEFAREGAA NDVLDADKSV 

       190        200        210        220        230        240 
ASGRTMEQIA AGKGRAPKPF MLAKRQRMNA DAIWHSNRSD GETKTSKVST KAASSRTKAA 

       250        260        270        280        290        300 
KAGRAKSSRV SKMAEPKTVS SLPDFVPPEL CTSVAQPPSG EGWAHEIKFD GYRVQIRVED 

       310        320        330        340        350        360 
GQAALKTRKG LDWTAKFGVI AEAAAKLPDA IIDGEIVALD KDGNPNFSAL QAAISAGQTD 

       370        380        390        400        410        420 
ELVFFAFDLM FVEEFDLRRQ PLRERKARLA KLLKANIKGK TPVIRYVEHF ESDGEAVLES 

       430        440        450        460        470        480 
ARKLSLEGIV SKKLDSAYHS GRTESWTKAK TRPGHEVVVG GWKTTNGKFR SLMVGVNKDD 

       490        500        510        520        530        540 
HLAYVGIVGT GFGQDTVKAI MPALKAAASD KSPFSGKNAP RKAREVHWLK PELVAEIEFA 

       550        560        570        580        590        600 
GFTGDGNVRQ ASFKGLRQDK PAREVVAEEP VVAAKVTKPV ARAAATVATG GTTVHKTPSR 

       610        620        630        640        650        660 
TKGAATVMGV AISKPDKALW PDAGDGEPVT KLDLATYLEA VGDWMIEHLK GRPCSIVRAP 

       670        680        690        700        710        720 
DGIGGERFFQ RHGMQGMSDL LELVKVSGDR KPYLQIDRVE GLIAVAQVAA VELHPWNCAP 

       730        740        750        760        770        780 
DAYDVPGRLV FDLDPAPNVA FEEVIAAAKE MRQRLKTLGL ESFCKTTGGK GLHVVTPLLH 

       790        800        810        820        830        840 
GARDQVTWPE AKAFAQGVCQ WMANDSPDDY LLNMSKKLRK GKIFLDYLRN DRMSTAVAVL 

       850        860        870        880        890        900 
SPRAREGATV SMPVTWAQVK NGLDPKRYTI RTVPALLAKT KAWDGYDDAA GAIRPAIRKL 


TDTL

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CU234118 Genomic DNA. Translation: CAL79487.1.
RefSeqYP_001207704.1. NC_009445.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING114615.BRADO5823.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAL79487; CAL79487; BRADO5823.
GeneID5115558.
KEGGbra:BRADO5823.
PATRIC21227589. VBIBraSp122330_5591.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALVAECEF.
ProtClustDBPRK05972.

Enzyme and pathway databases

BioCycBSP114615:GJN5-5564-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA4Z011_BRASO
AccessionPrimary (citable) accession number: A4Z011
Entry history
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: May 1, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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