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Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

BRADO5823

Organism
Bradyrhizobium sp. (strain ORS278)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBSP114615:GJN5-5564-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:BRADO5823Imported
OrganismiBradyrhizobium sp. (strain ORS278)Imported
Taxonomic identifieri114615 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
ProteomesiUP000001994: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi114615.BRADO5823.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4Z011-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALKKLSTYR KKRDFEKTAE PSGDARIAPA ARPRFVIQKH DATRLHYDLR
60 70 80 90 100
LEFDGVFKSW AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPEGEYGG
110 120 130 140 150
GTVMLWDRGY WESDDPERGF TKGDLKFTLE GEKLHGSWVL VRMRHDRTGG
160 170 180 190 200
KRTNWLLIKH RDEFAREGAA NDVLDADKSV ASGRTMEQIA AGKGRAPKPF
210 220 230 240 250
MLAKRQRMNA DAIWHSNRSD GETKTSKVST KAASSRTKAA KAGRAKSSRV
260 270 280 290 300
SKMAEPKTVS SLPDFVPPEL CTSVAQPPSG EGWAHEIKFD GYRVQIRVED
310 320 330 340 350
GQAALKTRKG LDWTAKFGVI AEAAAKLPDA IIDGEIVALD KDGNPNFSAL
360 370 380 390 400
QAAISAGQTD ELVFFAFDLM FVEEFDLRRQ PLRERKARLA KLLKANIKGK
410 420 430 440 450
TPVIRYVEHF ESDGEAVLES ARKLSLEGIV SKKLDSAYHS GRTESWTKAK
460 470 480 490 500
TRPGHEVVVG GWKTTNGKFR SLMVGVNKDD HLAYVGIVGT GFGQDTVKAI
510 520 530 540 550
MPALKAAASD KSPFSGKNAP RKAREVHWLK PELVAEIEFA GFTGDGNVRQ
560 570 580 590 600
ASFKGLRQDK PAREVVAEEP VVAAKVTKPV ARAAATVATG GTTVHKTPSR
610 620 630 640 650
TKGAATVMGV AISKPDKALW PDAGDGEPVT KLDLATYLEA VGDWMIEHLK
660 670 680 690 700
GRPCSIVRAP DGIGGERFFQ RHGMQGMSDL LELVKVSGDR KPYLQIDRVE
710 720 730 740 750
GLIAVAQVAA VELHPWNCAP DAYDVPGRLV FDLDPAPNVA FEEVIAAAKE
760 770 780 790 800
MRQRLKTLGL ESFCKTTGGK GLHVVTPLLH GARDQVTWPE AKAFAQGVCQ
810 820 830 840 850
WMANDSPDDY LLNMSKKLRK GKIFLDYLRN DRMSTAVAVL SPRAREGATV
860 870 880 890 900
SMPVTWAQVK NGLDPKRYTI RTVPALLAKT KAWDGYDDAA GAIRPAIRKL

TDTL
Length:904
Mass (Da):99,183
Last modified:May 29, 2007 - v1
Checksum:iAD28102C5609AF33
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU234118 Genomic DNA. Translation: CAL79487.1.
RefSeqiWP_012029390.1. NC_009445.1.
YP_001207704.1. NC_009445.1.

Genome annotation databases

EnsemblBacteriaiCAL79487; CAL79487; BRADO5823.
GeneIDi5115558.
KEGGibra:BRADO5823.
PATRICi21227589. VBIBraSp122330_5591.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU234118 Genomic DNA. Translation: CAL79487.1.
RefSeqiWP_012029390.1. NC_009445.1.
YP_001207704.1. NC_009445.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi114615.BRADO5823.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAL79487; CAL79487; BRADO5823.
GeneIDi5115558.
KEGGibra:BRADO5823.
PATRICi21227589. VBIBraSp122330_5591.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciBSP114615:GJN5-5564-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ORS278Imported.

Entry informationi

Entry nameiA4Z011_BRASO
AccessioniPrimary (citable) accession number: A4Z011
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: January 7, 2015
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.