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A4Z011

- A4Z011_BRASO

UniProt

A4Z011 - A4Z011_BRASO

Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

BRADO5823

Organism
Bradyrhizobium sp. (strain ORS278)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 47 (01 Oct 2014)
      Sequence version 1 (29 May 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBSP114615:GJN5-5564-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:BRADO5823Imported
    OrganismiBradyrhizobium sp. (strain ORS278)Imported
    Taxonomic identifieri114615 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
    ProteomesiUP000001994: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi114615.BRADO5823.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A4Z011-1 [UniParc]FASTAAdd to Basket

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    MALKKLSTYR KKRDFEKTAE PSGDARIAPA ARPRFVIQKH DATRLHYDLR    50
    LEFDGVFKSW AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPEGEYGG 100
    GTVMLWDRGY WESDDPERGF TKGDLKFTLE GEKLHGSWVL VRMRHDRTGG 150
    KRTNWLLIKH RDEFAREGAA NDVLDADKSV ASGRTMEQIA AGKGRAPKPF 200
    MLAKRQRMNA DAIWHSNRSD GETKTSKVST KAASSRTKAA KAGRAKSSRV 250
    SKMAEPKTVS SLPDFVPPEL CTSVAQPPSG EGWAHEIKFD GYRVQIRVED 300
    GQAALKTRKG LDWTAKFGVI AEAAAKLPDA IIDGEIVALD KDGNPNFSAL 350
    QAAISAGQTD ELVFFAFDLM FVEEFDLRRQ PLRERKARLA KLLKANIKGK 400
    TPVIRYVEHF ESDGEAVLES ARKLSLEGIV SKKLDSAYHS GRTESWTKAK 450
    TRPGHEVVVG GWKTTNGKFR SLMVGVNKDD HLAYVGIVGT GFGQDTVKAI 500
    MPALKAAASD KSPFSGKNAP RKAREVHWLK PELVAEIEFA GFTGDGNVRQ 550
    ASFKGLRQDK PAREVVAEEP VVAAKVTKPV ARAAATVATG GTTVHKTPSR 600
    TKGAATVMGV AISKPDKALW PDAGDGEPVT KLDLATYLEA VGDWMIEHLK 650
    GRPCSIVRAP DGIGGERFFQ RHGMQGMSDL LELVKVSGDR KPYLQIDRVE 700
    GLIAVAQVAA VELHPWNCAP DAYDVPGRLV FDLDPAPNVA FEEVIAAAKE 750
    MRQRLKTLGL ESFCKTTGGK GLHVVTPLLH GARDQVTWPE AKAFAQGVCQ 800
    WMANDSPDDY LLNMSKKLRK GKIFLDYLRN DRMSTAVAVL SPRAREGATV 850
    SMPVTWAQVK NGLDPKRYTI RTVPALLAKT KAWDGYDDAA GAIRPAIRKL 900
    TDTL 904
    Length:904
    Mass (Da):99,183
    Last modified:May 29, 2007 - v1
    Checksum:iAD28102C5609AF33
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CU234118 Genomic DNA. Translation: CAL79487.1.
    RefSeqiWP_012029390.1. NC_009445.1.
    YP_001207704.1. NC_009445.1.

    Genome annotation databases

    EnsemblBacteriaiCAL79487; CAL79487; BRADO5823.
    GeneIDi5115558.
    KEGGibra:BRADO5823.
    PATRICi21227589. VBIBraSp122330_5591.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CU234118 Genomic DNA. Translation: CAL79487.1 .
    RefSeqi WP_012029390.1. NC_009445.1.
    YP_001207704.1. NC_009445.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 114615.BRADO5823.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAL79487 ; CAL79487 ; BRADO5823 .
    GeneIDi 5115558.
    KEGGi bra:BRADO5823.
    PATRICi 21227589. VBIBraSp122330_5591.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci BSP114615:GJN5-5564-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ORS278Imported.

    Entry informationi

    Entry nameiA4Z011_BRASO
    AccessioniPrimary (citable) accession number: A4Z011
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 29, 2007
    Last sequence update: May 29, 2007
    Last modified: October 1, 2014
    This is version 47 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3