A4YSJ4 (A4YSJ4_BRASO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L23 HAMAP MF_01369 RuleBase RU003935

Gene names

Name:	rplW HAMAP MF_01369 EMBL CAL76870.1
Ordered Locus Names:	BRADO3068

Organism

Bradyrhizobium sp. (strain ORS278) [Complete proteome] [HAMAP]

Taxonomic identifier

114615 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Bradyrhizobium

Protein attributes

Sequence length	99 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity. HAMAP MF_01369
Subunit structure	Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity. HAMAP MF_01369
Sequence similarities	Belongs to the ribosomal protein L23P family. HAMAP MF_01369 RuleBase RU003934

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP MF_01369 RuleBase RU003935
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP MF_01369 RuleBase RU003934
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	nucleotide binding Inferred from electronic annotation. Source: InterPro rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A4YSJ4 [UniParc]. Last modified May 29, 2007. Version 1. Checksum: C9EC18D62F93EC5D	FASTA	99	11,041
	10 20 30 40 50 60 MKTIDPRHYD IIIAPVVTEK ATFASEQNKV LFKVAAKASK PQIKEAIEKL FDVKVRSVNT 70 80 90 LVRKGKTKVF RGNFGSQSDS KRAIVTLEEG HRIDVTTGL

References

[1]

"Legumes symbioses: absence of nod genes in photosynthetic bradyrhizobia." Giraud E., Moulin L., Vallenet D., Barbe V., Cytryn E., Avarre J.-C., Jaubert M., Simon D., Cartieaux F., Prin Y., Bena G., Hannibal L., Fardoux J., Kojadinovic M., Vuillet L., Lajus A., Cruveiller S., Rouy Z. , Mangenot S., Segurens B., Dossat C., Franck W.L., Chang W.-S., Saunders E., Bruce D., Richardson P., Normand P., Dreyfus B., Pignol D., Stacey G., Emerich D., Vermeglio A., Medigue C., Sadowsky M. Science 316:1307-1312(2007) [PubMed: 17540897] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CU234118 Genomic DNA. Translation: CAL76870.1.
RefSeq	YP_001205107.1. NC_009445.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	A4YSJ4.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5117009.
GenomeReviews	Gene locus BRADO3068 in contig CU234118_GR.
KEGG	bra:BRADO3068.
PATRIC	21222323. VBIBraSp122330_2979.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0089.
HOGENOM	HBG439330.
OMA	WKKAYVS.
ProtClustDB	PRK05738.
Family and domain databases
HAMAP	MF_01369_B. Ribosomal_L23_B. [Tree]
InterPro	IPR012677. Nucleotide-bd_a/b_plait. IPR012678. Ribosomal_L23/L15e_core_dom. IPR001014. Ribosomal_L23/L25_CS. IPR013025. Ribosomal_L25/23. [Graphical view]
Gene3D	G3DSA:3.30.70.330. a_b_plait_nuc_bd. 1 hit.
KO	K02892.
Pfam	PF00276. Ribosomal_L23. 1 hit. [Graphical view]
SUPFAM	SSF54189. L23_L15e_core. 1 hit.
PROSITE	PS00050. RIBOSOMAL_L23. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A4YSJ4_BRASO

Accession

Primary (citable) accession number: A4YSJ4

Entry history

Integrated into UniProtKB/TrEMBL:	May 29, 2007
Last sequence update:	May 29, 2007
Last modified:	December 14, 2011
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)