Reviewed, UniProtKB/Swiss-Prot A4YBB9 (SELD_SHEPC)

Names and origin

Protein names

Recommended name:
    Selenide, water dikinase
    EC=2.7.9.3
Alternative name(s):
    Selenophosphate synthetase
    Selenium donor protein

Gene names

Name:	selD
Ordered Locus Names:	Sputcn32_3543

Organism

Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) [Complete proteome] [HAMAP]

Taxonomic identifier

319224 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	352 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Synthesizes selenophosphate from selenide and ATP By similarity.
Catalytic activity	ATP + selenide + H2O = AMP + selenophosphate + phosphate. HAMAP MF_00625
Cofactor	Magnesium By similarity.
Sequence similarities	Belongs to the selenophosphate synthetase 1 family. Class I subfamily.

Ontologies

Keywords
Ligand	ATP-binding Magnesium Nucleotide-binding Selenium
Molecular function	Kinase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	ATP binding Inferred from electronic annotation. Source: HAMAP magnesium ion binding Inferred from electronic annotation. Source: HAMAP selenide, water dikinase activity Inferred from electronic annotation. Source: HAMAP selenium binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 352	352	Selenide, water dikinase HAMAP MF_00625		PRO_1000051603
Regions
	Nucleotide binding	236 – 242	7	ATP Potential
Sites
	Active site	23	1	Potential
	Site	26	1	Important for catalytic activity By similarity

Sequences

	Sequence		Length	Mass (Da)
	A4YBB9-1 [UniParc]. Last modified May 29, 2007. Version 1. Checksum: 4EF7F55E968E9CEB	FASTA	352	36,929
	10 20 30 40 50 60 MSDSPVTLPE SIKLTEYSHG AGCGCKISPK VLSTILASQL PVFTDPNLLV GNQSRDDAAV 70 80 90 100 110 120 YKLNDEIGII STTDFFMPIV DDPFTFGRIA ATNAISDIYA MGGTPIMAIA ILGWPINKLP 130 140 150 160 170 180 AEIAQQVVDG GRQACMEAGI MLAGGHSIDA PEPIFGLAVT GQIALSDLKQ NDTAKKGDRL 190 200 210 220 230 240 YLTKPIGIGI LTTAQKQKKL HDEDSLIAVN AMCQLNTIGA TIAKISGVNA LTDVTGFGLA 250 260 270 280 290 300 GHLLEMCQGA NLTAKLKFDA VPLLPRALDY LALGCVPGGT HRNYDSYGEH LPELSEHQKA 310 320 330 340 350 ILCDPQTSGG LLVAVSAAAE AELIALLDAN HITPICIGSL ETPTTQANVV LC

References

[1]

"Complete sequence of Shewanella putrefaciens CN-32." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Mikhailova N., Romine M.F., Fredrickson J., Tiedje J., Richardson P. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP000681 Genomic DNA. Translation: ABP77252.1.
RefSeq	YP_001185051.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	A4YBB9.
Genome annotation databases
GeneID	5078736.
GenomeReviews	Gene locus Sputcn32_3543 in contig CP000681_GR.
KEGG	spc:Sputcn32_3543.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	MMAIAIL.
Family and domain databases
HAMAP	MF_00625. [Tree]
InterPro	IPR000728. AIR_synth. IPR010918. AIR_synth_C. IPR004536. SelD. [Graphical view]
Pfam	PF00586. AIRS. 1 hit. PF02769. AIRS_C. 1 hit. [Graphical view]
PIRSF	PIRSF036407. Selenphspht_syn. 1 hit.
TIGRFAMs	TIGR00476. selD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

SELD_SHEPC

Accession

Primary (citable) accession number: A4YBB9

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 15, 2008
Last sequence update:	May 29, 2007
Last modified:	November 3, 2009
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)