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A4YBB9 (SELD_SHEPC) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Selenide, water dikinase
EC=2.7.9.3
Alternative name(s):
Selenium donor protein
Selenophosphate synthase
Gene names
Name:selD
Ordered Locus Names:Sputcn32_3543
OrganismShewanella putrefaciens (strain CN-32 / ATCC BAA-453) [Complete proteome] [HAMAP]
Taxonomic identifier319224 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length352 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Synthesizes selenophosphate from selenide and ATP By similarity. HAMAP MF_00625

Catalytic activity

ATP + selenide + H2O = AMP + selenophosphate + phosphate. HAMAP MF_00625

Cofactor

Magnesium By similarity. HAMAP MF_00625

Sequence similarities

Belongs to the selenophosphate synthase 1 family. Class I subfamily.

Ontologies

Keywords
   LigandATP-binding
Magnesium
Nucleotide-binding
Selenium
   Molecular functionKinase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

selenide, water dikinase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 352352Selenide, water dikinase HAMAP MF_00625
PRO_1000051603

Regions

Nucleotide binding236 – 2427ATP Potential

Sites

Active site231 Potential
Site261Important for catalytic activity By similarity

Sequences

Sequence LengthMass (Da)Tools
A4YBB9 [UniParc].

Last modified May 29, 2007. Version 1.
Checksum: 4EF7F55E968E9CEB

FASTA35236,929
        10         20         30         40         50         60 
MSDSPVTLPE SIKLTEYSHG AGCGCKISPK VLSTILASQL PVFTDPNLLV GNQSRDDAAV 

        70         80         90        100        110        120 
YKLNDEIGII STTDFFMPIV DDPFTFGRIA ATNAISDIYA MGGTPIMAIA ILGWPINKLP 

       130        140        150        160        170        180 
AEIAQQVVDG GRQACMEAGI MLAGGHSIDA PEPIFGLAVT GQIALSDLKQ NDTAKKGDRL 

       190        200        210        220        230        240 
YLTKPIGIGI LTTAQKQKKL HDEDSLIAVN AMCQLNTIGA TIAKISGVNA LTDVTGFGLA 

       250        260        270        280        290        300 
GHLLEMCQGA NLTAKLKFDA VPLLPRALDY LALGCVPGGT HRNYDSYGEH LPELSEHQKA 

       310        320        330        340        350 
ILCDPQTSGG LLVAVSAAAE AELIALLDAN HITPICIGSL ETPTTQANVV LC

« Hide

References

[1]"Complete sequence of Shewanella putrefaciens CN-32."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Mikhailova N., Romine M.F., Fredrickson J., Tiedje J., Richardson P.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CN-32 / ATCC BAA-453.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000681 Genomic DNA. Translation: ABP77252.1.
RefSeqYP_001185051.1. NC_009438.1.

3D structure databases

ProteinModelPortalA4YBB9.
ModBaseSearch...

Protein-protein interaction databases

STRINGA4YBB9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5078736.
GenomeReviewsGene locus Sputcn32_3543 in contig CP000681_GR.
KEGGspc:Sputcn32_3543.
PATRIC23556158. VBIShePut135485_3703.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0709.
HOGENOMHBG383791.
OMAMMAIAIL.
PhylomeDBA4YBB9.
ProtClustDBPRK00943.

Family and domain databases

HAMAPMF_00625. SelD.
[Tree]
InterProIPR000728. AIR_synth.
IPR010918. AIR_synth_C.
IPR016188. PurM_N-like.
IPR004536. SelD.
IPR023061. SelD_I.
[Graphical view]
KOK01008.
PfamPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMSSF56042. AIR_synth_C. 1 hit.
SSF55326. PurM_N-like. 1 hit.
TIGRFAMsTIGR00476. SelD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameSELD_SHEPC
AccessionPrimary (citable) accession number: A4YBB9
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: May 29, 2007
Last modified: December 14, 2011
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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