A4Y690 (A4Y690_SHEPC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ABP75473.1

Gene names

Ordered Locus Names:

Sputcn32_1748

Organism

Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) [Complete proteome] [HAMAP] EMBL ABP75473.1

Taxonomic identifier

319224 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella › Shewanella putrefaciens

Protein attributes

Sequence length	309 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABP75473.1
Molecular function	Ligase EMBL ABP75473.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 35	35	Potential EMBL ABP75473.1
	Chain	36 – 309	274	Potential EMBL ABP75473.1		PRO_5000241475

Sequences

	Sequence		Length	Mass (Da)
	A4Y690 [UniParc]. Last modified May 29, 2007. Version 1. Checksum: 5B27428EA2ADAF5D	FASTA	309	34,582
	10 20 30 40 50 60 MTHTSQLFLL ISNPFILLRL LLVSLLLVCL LVNANPSAPK IQLATELTAD KTSYDIREFL 70 80 90 100 110 120 ISEKLDGVRG YWTGHRLVTR QGYPINAPVW FTADFPTIPI DGELWLGRGQ FEAISSLIRQ 130 140 150 160 170 180 SSPKEDAWRN VRFMVFDLPK AEGNFEQRYR LAIKMFAGKS AYIEVIEQFQ LDSIEALYQK 190 200 210 220 230 240 LDSLVVLGAE GLMLHRRSAY YIAGRNPNLM KLKPYFDAEA KVIAHIAGKG QFTGQMGALK 250 260 270 280 290 300 VQTSDGRIFS IGTGFSHAER QHPPAVGTII TYKYLGLTVN GLPRFASFLR VRTDIVESPL DGGVDRSGQ

References

[1]

"Complete sequence of Shewanella putrefaciens CN-32." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Mikhailova N., Romine M.F., Fredrickson J., Tiedje J., Richardson P. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CN-32 / ATCC BAA-453.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000681 Genomic DNA. Translation: ABP75473.1.
RefSeq	YP_001183272.1. NC_009438.1.
3D structure databases
ProteinModelPortal	A4Y690.
ModBase	Search...
Protein-protein interaction databases
STRING	319224.Sputcn32_1748.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABP75473; ABP75473; Sputcn32_1748.
GeneID	5079306.
KEGG	spc:Sputcn32_1748.
PATRIC	23552240. VBIShePut135485_1814.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000293070.
KO	K01971.
OMA	VRGYWDG.
ProtClustDB	PRK09125.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A4Y690_SHEPC

Accession

Primary (citable) accession number: A4Y690

Entry history

Integrated into UniProtKB/TrEMBL:	May 29, 2007
Last sequence update:	May 29, 2007
Last modified:	May 1, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)