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A4Y690 (A4Y690_SHEPC) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 41. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Sputcn32_1748 EMBL ABP75473.1
OrganismShewanella putrefaciens (strain CN-32 / ATCC BAA-453) [Complete proteome] [HAMAP] EMBL ABP75473.1
Taxonomic identifier319224 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length309 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABP75473.1
   Molecular functionLigase EMBL ABP75473.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3535 Potential EMBL ABP75473.1
Chain36 – 309274 Potential EMBL ABP75473.1
PRO_5000241475

Sequences

Sequence LengthMass (Da)Tools
A4Y690 [UniParc].

Last modified May 29, 2007. Version 1.
Checksum: 5B27428EA2ADAF5D

FASTA30934,582
        10         20         30         40         50         60 
MTHTSQLFLL ISNPFILLRL LLVSLLLVCL LVNANPSAPK IQLATELTAD KTSYDIREFL 

        70         80         90        100        110        120 
ISEKLDGVRG YWTGHRLVTR QGYPINAPVW FTADFPTIPI DGELWLGRGQ FEAISSLIRQ 

       130        140        150        160        170        180 
SSPKEDAWRN VRFMVFDLPK AEGNFEQRYR LAIKMFAGKS AYIEVIEQFQ LDSIEALYQK 

       190        200        210        220        230        240 
LDSLVVLGAE GLMLHRRSAY YIAGRNPNLM KLKPYFDAEA KVIAHIAGKG QFTGQMGALK 

       250        260        270        280        290        300 
VQTSDGRIFS IGTGFSHAER QHPPAVGTII TYKYLGLTVN GLPRFASFLR VRTDIVESPL 


DGGVDRSGQ 

« Hide

References

[1]"Complete sequence of Shewanella putrefaciens CN-32."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Mikhailova N., Romine M.F., Fredrickson J., Tiedje J., Richardson P.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CN-32 / ATCC BAA-453.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000681 Genomic DNA. Translation: ABP75473.1.
RefSeqYP_001183272.1. NC_009438.1.

3D structure databases

ProteinModelPortalA4Y690.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING319224.Sputcn32_1748.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABP75473; ABP75473; Sputcn32_1748.
GeneID5079306.
KEGGspc:Sputcn32_1748.
PATRIC23552240. VBIShePut135485_1814.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000293070.
KOK01971.
OMASLVTYRY.
OrthoDBEOG60919Q.

Enzyme and pathway databases

BioCycSPUT319224:GHAP-1792-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA4Y690_SHEPC
AccessionPrimary (citable) accession number: A4Y690
Entry history
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: June 11, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)