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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Sputcn32_1748

Organism
Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSPUT319224:GHAP-1792-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Sputcn32_1748Imported
OrganismiShewanella putrefaciens (strain CN-32 / ATCC BAA-453)Imported
Taxonomic identifieri319224 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000006699: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3535 PotentialImportedAdd
BLAST
Chaini36 – 309274 PotentialImportedPRO_5000241475Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi319224.Sputcn32_1748.

Structurei

3D structure databases

ProteinModelPortaliA4Y690.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A4Y690-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTHTSQLFLL ISNPFILLRL LLVSLLLVCL LVNANPSAPK IQLATELTAD
60 70 80 90 100
KTSYDIREFL ISEKLDGVRG YWTGHRLVTR QGYPINAPVW FTADFPTIPI
110 120 130 140 150
DGELWLGRGQ FEAISSLIRQ SSPKEDAWRN VRFMVFDLPK AEGNFEQRYR
160 170 180 190 200
LAIKMFAGKS AYIEVIEQFQ LDSIEALYQK LDSLVVLGAE GLMLHRRSAY
210 220 230 240 250
YIAGRNPNLM KLKPYFDAEA KVIAHIAGKG QFTGQMGALK VQTSDGRIFS
260 270 280 290 300
IGTGFSHAER QHPPAVGTII TYKYLGLTVN GLPRFASFLR VRTDIVESPL

DGGVDRSGQ
Length:309
Mass (Da):34,582
Last modified:May 29, 2007 - v1
Checksum:i5B27428EA2ADAF5D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000681 Genomic DNA. Translation: ABP75473.1.
RefSeqiYP_001183272.1. NC_009438.1.

Genome annotation databases

EnsemblBacteriaiABP75473; ABP75473; Sputcn32_1748.
GeneIDi5079306.
KEGGispc:Sputcn32_1748.
PATRICi23552240. VBIShePut135485_1814.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000681 Genomic DNA. Translation: ABP75473.1.
RefSeqiYP_001183272.1. NC_009438.1.

3D structure databases

ProteinModelPortaliA4Y690.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi319224.Sputcn32_1748.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABP75473; ABP75473; Sputcn32_1748.
GeneIDi5079306.
KEGGispc:Sputcn32_1748.
PATRICi23552240. VBIShePut135485_1814.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Enzyme and pathway databases

BioCyciSPUT319224:GHAP-1792-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CN-32 / ATCC BAA-453Imported.

Entry informationi

Entry nameiA4Y690_SHEPC
AccessioniPrimary (citable) accession number: A4Y690
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: January 7, 2015
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.