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Protein

Ribosomal RNA large subunit methyltransferase F

Gene

rlmF

Organism
Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Specifically methylates the adenine in position 1618 of 23S rRNA.UniRule annotation

Catalytic activityi

S-adenosyl-L-methionine + adenine(1618) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N6-methyladenine(1618) in 23S rRNA.UniRule annotation

GO - Molecular functioni

Keywordsi

Molecular functionMethyltransferase, Transferase
Biological processrRNA processing
LigandS-adenosyl-L-methionine

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA large subunit methyltransferase FUniRule annotation (EC:2.1.1.181UniRule annotation)
Alternative name(s):
23S rRNA mA1618 methyltransferaseUniRule annotation
rRNA adenine N-6-methyltransferaseUniRule annotation
Gene namesi
Name:rlmFUniRule annotation
Ordered Locus Names:Sputcn32_0128
OrganismiShewanella putrefaciens (strain CN-32 / ATCC BAA-453)
Taxonomic identifieri319224 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
Proteomesi
  • UP000006699 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003499601 – 357Ribosomal RNA large subunit methyltransferase FAdd BLAST357

Proteomic databases

PRIDEiA4Y1N1

Interactioni

Protein-protein interaction databases

STRINGi319224.Sputcn32_0128

Structurei

3D structure databases

ProteinModelPortaliA4Y1N1
SMRiA4Y1N1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the methyltransferase superfamily. METTL16/RlmF family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105EBA Bacteria
COG3129 LUCA
HOGENOMiHOG000218605
KOiK06970
OMAiTEFHQGH
OrthoDBiPOG091H05H4

Family and domain databases

HAMAPiMF_01848 23SrRNA_methyltr_F, 1 hit
InterProiView protein in InterPro
IPR016909 rRNA_lsu_MeTfrase_F
IPR010286 rRNA_lsu_MeTfrase_F-like
IPR029063 SAM-dependent_MTases
PANTHERiPTHR13393 PTHR13393, 1 hit
PfamiView protein in Pfam
PF05971 Methyltransf_10, 1 hit
PIRSFiPIRSF029038 Mtase_YbiN_prd, 1 hit
SUPFAMiSSF53335 SSF53335, 1 hit

Sequencei

Sequence statusi: Complete.

A4Y1N1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKPPRSTQI LSCNAPNGKP KTQHPSARAK VKRTPVNTRS IAEIKKALHP
60 70 80 90 100
RNVHINGYDF NALIKAFPRL NAFVRPTSFG GLSIDFADPE AVKTLNTALL
110 120 130 140 150
KHHYGIDFWD IPKGALCPPI PGRVDYLHYL ADLLAEGDHH LVMDRVSVLD
160 170 180 190 200
IGTGANGIYP ILGCQVFGWH FVASDINSIS LANVQGIIAQ NPALHGRLNL
210 220 230 240 250
RLQGDESAIF KGVIQPQERF ELTLCNPPFH ASLAEAAEGS LRKVRNLQLN
260 270 280 290 300
RGRTAKPVAK LNFGGQGAEL WCQGGEPQFL ATMIDESQAF ADQCLWFTSL
310 320 330 340 350
VSKKENLKPC YQALAKLAVD TVKTIEMQQG NKMTRILAWS FQSAAKRKIW

RNAHLSD
Length:357
Mass (Da):39,438
Last modified:May 29, 2007 - v1
Checksum:iBFD1A92ED24C8ED4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000681 Genomic DNA Translation: ABP73864.1
RefSeqiWP_011791170.1, NC_009438.1

Genome annotation databases

EnsemblBacteriaiABP73864; ABP73864; Sputcn32_0128
KEGGispc:Sputcn32_0128

Similar proteinsi

Entry informationi

Entry nameiRLMF_SHEPC
AccessioniPrimary (citable) accession number: A4Y1N1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: May 29, 2007
Last modified: May 23, 2018
This is version 64 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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