A4Y125 (A4Y125_PSEMY) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Exonuclease, RNase T and DNA polymerase III EMBL ABP87291.1

Gene names

Ordered Locus Names:

Pmen_4544

Organism

Pseudomonas mendocina (strain ymp) [Complete proteome] [HAMAP] EMBL ABP87291.1

Taxonomic identifier

399739 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas aeruginosa group › Pseudomonas mendocina

Protein attributes

Sequence length	235 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Exonuclease EMBL ABP87291.1 Hydrolase Nuclease
Technical term	Complete proteome
Gene Ontology (GO)
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	exonuclease activity Inferred from electronic annotation. Source: UniProtKB-KW nucleic acid binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A4Y125 [UniParc]. Last modified May 29, 2007. Version 1. Checksum: 8143ACB016A60BA4	FASTA	235	26,382
	10 20 30 40 50 60 MSERAAQDWP QLFASLAESS RDPRLRAYYG AGCVTADTPL AEVPLVALDV ETTGLDPREH 70 80 90 100 110 120 AIVSLGLVPL NLQRIRCSEA RYWVVKPAGE LSAESVTFHH ITHSDIRHAP RLASVLDELL 130 140 150 160 170 180 EALAGKVVVA HYRHIERSFL DQALRRHLGE GLIFPIIDTM ELEARLHPKR RVSWWNRLRG 190 200 210 220 230 RRPLSIRLAD SRLRYGLPLY SAHHALTDAL ACGELLQAQV AKHYPPHTPV GALWS

References

[1]

"Complete sequence of Pseudomonas mendocina ymp." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Detter J.C., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. , Mikhailova N., Hersman L., Dubois J., Maurice P., Richardson P. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ymp.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000680 Genomic DNA. Translation: ABP87291.1.
RefSeq	YP_001190023.1. NC_009439.1.
3D structure databases
ProteinModelPortal	A4Y125.
ModBase	Search...
Protein-protein interaction databases
STRING	399739.Pmen_4544.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABP87291; ABP87291; Pmen_4544.
GeneID	5107002.
KEGG	pmy:Pmen_4544.
PATRIC	19915782. VBIPseMen131592_4608.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0847.
HOGENOM	HOG000290284.
KO	K02342.
OMA	IIHGITH.
ProtClustDB	PRK09146.
Enzyme and pathway databases
BioCyc	PMEN399739:GHR6-4624-MONOMER.
Family and domain databases
InterPro	IPR006055. Exonuclease. IPR013520. Exonuclease_RNaseT/DNA_pol3. IPR012337. RNaseH-like_dom. [Graphical view]
Pfam	PF00929. RNase_T. 1 hit. [Graphical view]
SMART	SM00479. EXOIII. 1 hit. [Graphical view]
SUPFAM	SSF53098. RNaseH_fold. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A4Y125_PSEMY

Accession

Primary (citable) accession number: A4Y125

Entry history

Integrated into UniProtKB/TrEMBL:	May 29, 2007
Last sequence update:	May 29, 2007
Last modified:	May 1, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)