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Protein

Ribosomal RNA small subunit methyltransferase C

Gene

rsmC

Organism
Pseudomonas mendocina (strain ymp)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle.UniRule annotation

Catalytic activityi

S-adenosyl-L-methionine + guanine(1207) in 16S rRNA = S-adenosyl-L-homocysteine + N(2)-methylguanine(1207) in 16S rRNA.UniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Methyltransferase, Transferase

Keywords - Biological processi

rRNA processing

Keywords - Ligandi

S-adenosyl-L-methionine

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA small subunit methyltransferase CUniRule annotation (EC:2.1.1.172UniRule annotation)
Alternative name(s):
16S rRNA m2G1207 methyltransferaseUniRule annotation
rRNA (guanine-N(2)-)-methyltransferase RsmCUniRule annotation
Gene namesi
Name:rsmCUniRule annotation
Ordered Locus Names:Pmen_3665
OrganismiPseudomonas mendocina (strain ymp)
Taxonomic identifieri399739 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000000229 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003697411 – 331Ribosomal RNA small subunit methyltransferase CAdd BLAST331

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi399739.Pmen_3665.

Structurei

3D structure databases

ProteinModelPortaliA4XYJ7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the methyltransferase superfamily. RsmC family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105D8J. Bacteria.
COG2813. LUCA.
HOGENOMiHOG000218308.
KOiK00564.
OMAiRHCQLWQ.
OrthoDBiPOG091H05RK.

Family and domain databases

Gene3Di3.40.50.150. 1 hit.
HAMAPiMF_01862. 16SrRNA_methyltr_C. 1 hit.
InterProiIPR002052. DNA_methylase_N6_adenine_CS.
IPR013675. Mtase_sm_N.
IPR023543. rRNA_ssu_MeTfrase_C.
IPR029063. SAM-dependent_MTases.
IPR007848. Small_mtfrase_dom.
[Graphical view]
PfamiPF05175. MTS. 1 hit.
PF08468. MTS_N. 1 hit.
[Graphical view]
SUPFAMiSSF53335. SSF53335. 1 hit.

Sequencei

Sequence statusi: Complete.

A4XYJ7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDPRSEVLLR QAELFEGELL LAGLPADDLL GLLPQAHGWS WHAGDQAQLA
60 70 80 90 100
ARFAGRSRFD TQMPEGDYRA AVLFLPKSRE LTDYLLQALA SRLTGRPLYL
110 120 130 140 150
VGEKRGGIER AAKQLAVYGK PRKLDSARHC QLWSVQIEQA PATPDLDALA
160 170 180 190 200
QVYSLQLADG PLQVVSLPGV FAHGRLDRGS ALLLEHLDSL PQGHLLDFGC
210 220 230 240 250
GAGVIGAALK RRYPSSRVSL LDVDAFALAS SRLTLARNGL EAELIAGTGI
260 270 280 290 300
ESAPGELAAI VSNPPFHQGV HTHYQASENL LTQAARHLRD GGELRLVANS
310 320 330
FLKYPPLIER HLGPCRTLAE AEGFRIYSAR R
Length:331
Mass (Da):35,993
Last modified:May 29, 2007 - v1
Checksum:iD4936E15B8857188
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000680 Genomic DNA. Translation: ABP86413.1.
RefSeqiWP_012019614.1. NC_009439.1.

Genome annotation databases

EnsemblBacteriaiABP86413; ABP86413; Pmen_3665.
GeneIDi5110126.
KEGGipmy:Pmen_3665.
PATRICi19913962. VBIPseMen131592_3716.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000680 Genomic DNA. Translation: ABP86413.1.
RefSeqiWP_012019614.1. NC_009439.1.

3D structure databases

ProteinModelPortaliA4XYJ7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi399739.Pmen_3665.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABP86413; ABP86413; Pmen_3665.
GeneIDi5110126.
KEGGipmy:Pmen_3665.
PATRICi19913962. VBIPseMen131592_3716.

Phylogenomic databases

eggNOGiENOG4105D8J. Bacteria.
COG2813. LUCA.
HOGENOMiHOG000218308.
KOiK00564.
OMAiRHCQLWQ.
OrthoDBiPOG091H05RK.

Family and domain databases

Gene3Di3.40.50.150. 1 hit.
HAMAPiMF_01862. 16SrRNA_methyltr_C. 1 hit.
InterProiIPR002052. DNA_methylase_N6_adenine_CS.
IPR013675. Mtase_sm_N.
IPR023543. rRNA_ssu_MeTfrase_C.
IPR029063. SAM-dependent_MTases.
IPR007848. Small_mtfrase_dom.
[Graphical view]
PfamiPF05175. MTS. 1 hit.
PF08468. MTS_N. 1 hit.
[Graphical view]
SUPFAMiSSF53335. SSF53335. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRSMC_PSEMY
AccessioniPrimary (citable) accession number: A4XYJ7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: May 29, 2007
Last modified: November 2, 2016
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.