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Protein

Probable D-serine dehydratase

Gene

dsdA

Organism
Pseudomonas mendocina (strain ymp)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

D-serine = pyruvate + NH3.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Ligandi

Pyridoxal phosphate

Names & Taxonomyi

Protein namesi
Recommended name:
Probable D-serine dehydrataseUniRule annotation (EC:4.3.1.18UniRule annotation)
Alternative name(s):
D-serine deaminaseUniRule annotation
Short name:
DSDUniRule annotation
Gene namesi
Name:dsdAUniRule annotation
Ordered Locus Names:Pmen_3266
OrganismiPseudomonas mendocina (strain ymp)
Taxonomic identifieri399739 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000000229 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000637141 – 446Probable D-serine dehydrataseAdd BLAST446

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei118N6-(pyridoxal phosphate)lysineUniRule annotation1

Interactioni

Protein-protein interaction databases

STRINGi399739.Pmen_3266.

Structurei

3D structure databases

ProteinModelPortaliA4XXF3.
SMRiA4XXF3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the serine/threonine dehydratase family. DsdA subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105BZC. Bacteria.
COG3048. LUCA.
HOGENOMiHOG000218072.
KOiK01753.
OMAiESDPNCF.
OrthoDBiPOG091H0G2T.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat. 1 hit.
InterProiIPR011780. D_Ser_am_lyase.
IPR000634. Ser/Thr_deHydtase_PyrdxlP-BS.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 3 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.
PROSITEiPS00165. DEHYDRATASE_SER_THR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4XXF3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MILGQPLAQW RAQYPLLDEL IALRETSWFN PAVAPAAEAL GDVGLSAADV
60 70 80 90 100
ADARARLERF APYLARAFPQ TAASGGIIES DILPLPQMQA LLREEAEGEI
110 120 130 140 150
GALWLKRDSH LPISGSIKAR GGIYEVLKHA EDLALAAGLL GLDDDYACLD
160 170 180 190 200
SDAMRAFFGG YQVAVGSTGN LGLSIGIISA RLGFQATVHM SADARQWKKD
210 220 230 240 250
KLRAHGVTVV EYASDYSVAV EQGRRQAEAD PRCHFVDDEN SRHLFLGYAV
260 270 280 290 300
AGERLRQQLA AANVVVDAEH PLFVYLPCGV GGGPGGVAFG LKLAFGDAVH
310 320 330 340 350
CLFAEPTHSP CMLLGVHTGR HEELAVQDFG IDNRTAADGL AVGRPSGFVG
360 370 380 390 400
RAMQRLIDGY YTVSDEQLFR YLALVEQTEG QRLEPSALAG MPGVLRVLGE
410 420 430 440
RQGYRQRMGL TPQRMARATH LVWATGGSMV PEAEMDSYLA RGRQLL
Length:446
Mass (Da):48,120
Last modified:May 29, 2007 - v1
Checksum:i78ABFB717C300E30
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000680 Genomic DNA. Translation: ABP86019.1.
RefSeqiWP_012019367.1. NC_009439.1.

Genome annotation databases

EnsemblBacteriaiABP86019; ABP86019; Pmen_3266.
GeneIDi5106773.
KEGGipmy:Pmen_3266.
PATRICi19913149. VBIPseMen131592_3313.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000680 Genomic DNA. Translation: ABP86019.1.
RefSeqiWP_012019367.1. NC_009439.1.

3D structure databases

ProteinModelPortaliA4XXF3.
SMRiA4XXF3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi399739.Pmen_3266.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABP86019; ABP86019; Pmen_3266.
GeneIDi5106773.
KEGGipmy:Pmen_3266.
PATRICi19913149. VBIPseMen131592_3313.

Phylogenomic databases

eggNOGiENOG4105BZC. Bacteria.
COG3048. LUCA.
HOGENOMiHOG000218072.
KOiK01753.
OMAiESDPNCF.
OrthoDBiPOG091H0G2T.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat. 1 hit.
InterProiIPR011780. D_Ser_am_lyase.
IPR000634. Ser/Thr_deHydtase_PyrdxlP-BS.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 3 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.
PROSITEiPS00165. DEHYDRATASE_SER_THR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSDHD_PSEMY
AccessioniPrimary (citable) accession number: A4XXF3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: May 29, 2007
Last modified: November 2, 2016
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.