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A4XX20

- A4XX20_PSEMY

UniProt

A4XX20 - A4XX20_PSEMY

Protein
Submitted name:

Alpha amylase, catalytic region

Gene

Pmen_3133

Organism
Pseudomonas mendocina (strain ymp)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 44 (01 Oct 2014)
      Sequence version 1 (29 May 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. alpha-amylase activity Source: InterPro
    2. calcium ion binding Source: InterPro

    GO - Biological processi

    1. alpha-glucan catabolic process Source: InterPro
    2. cellular oligosaccharide catabolic process Source: InterPro

    Enzyme and pathway databases

    BioCyciPMEN399739:GHR6-3192-MONOMER.

    Protein family/group databases

    CAZyiGH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Alpha amylase, catalytic regionImported
    Gene namesi
    Ordered Locus Names:Pmen_3133Imported
    OrganismiPseudomonas mendocina (strain ymp)Imported
    Taxonomic identifieri399739 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000000229: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. periplasmic space Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2525 PotentialImportedAdd
    BLAST
    Chaini26 – 687662 PotentialImportedPRO_5000240748Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi399739.Pmen_3133.

    Structurei

    3D structure databases

    ProteinModelPortaliA4XX20.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    eggNOGiCOG0366.
    HOGENOMiHOG000273912.
    KOiK01176.
    OMAiGQNWHSF.
    OrthoDBiEOG65QWH3.

    Family and domain databases

    Gene3Di3.20.20.80. 2 hits.
    InterProiIPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTiSM00642. Aamy. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    A4XX20-1 [UniParc]FASTAAdd to Basket

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    MRRPSLPTSL TTLACALLCQ FASAEPQLQA WLDQRPVPLQ WSNPAPQRYS    50
    VELELSAGQL RLQAPNASGS AQPLALYQRQ DWHARSSLSL QIGEPGRYRL 100
    LFQEDAQPHL RLLPLREQAP RSACRTWQGE ALSVAVGQVF ADGEVLRDAY 150
    SGQLATVENG RIELTPAAHS DGLLLLEPAE PAPAPAHDWR NATVYFAITD 200
    RFANGDTGND RSYGRQPDGE QEIGTFHGGD LRGLTGKLDY LQQLGVNALW 250
    ISAPFEQIHG WVGGGDKGDF RHYAYHGYYA LDFTRLDANM GTEDELRELI 300
    AQAHARGIRV LFDVVLNHPG YSTLADMQVL GFGALRGGMD QYLPPRWSDW 350
    QPESFENLHA YHNLIDYQHD AWRQWWGKDW VRADIADYDS PPSVLVDPRQ 400
    GSLAFLPDFK TESQQPVSLP PFLLRKADTR AVPREGYRVR DYLVEWLSFW 450
    VREFGVDGFR ADTVKHVELE SWAALRQAAD KARAEWSAAN PDDPMSGSPF 500
    WMVGEVFGHG PQASVYQDHG FDALINFDFQ GELAARGSEC LRQVEDGYRD 550
    YAELLANDAR HNFMSYASSH DTSLFFAEQG ERLARQRGLA CALLLAPGAV 600
    QIYYGDESAR PLGPTGSDPH QGTRSSMNWD AQQQAPVAEL LAHWRLLGQF 650
    RARHPAIGAG RHQQLSSQPY AFARTLGKDR VVIVQGR 687
    Length:687
    Mass (Da):76,853
    Last modified:May 29, 2007 - v1
    Checksum:i6F961366AD1730AF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000680 Genomic DNA. Translation: ABP85886.1.
    RefSeqiYP_001188618.1. NC_009439.1.

    Genome annotation databases

    EnsemblBacteriaiABP85886; ABP85886; Pmen_3133.
    GeneIDi5107455.
    KEGGipmy:Pmen_3133.
    PATRICi19912870. VBIPseMen131592_3175.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000680 Genomic DNA. Translation: ABP85886.1 .
    RefSeqi YP_001188618.1. NC_009439.1.

    3D structure databases

    ProteinModelPortali A4XX20.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 399739.Pmen_3133.

    Protein family/group databases

    CAZyi GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABP85886 ; ABP85886 ; Pmen_3133 .
    GeneIDi 5107455.
    KEGGi pmy:Pmen_3133.
    PATRICi 19912870. VBIPseMen131592_3175.

    Phylogenomic databases

    eggNOGi COG0366.
    HOGENOMi HOG000273912.
    KOi K01176.
    OMAi GQNWHSF.
    OrthoDBi EOG65QWH3.

    Enzyme and pathway databases

    BioCyci PMEN399739:GHR6-3192-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.80. 2 hits.
    InterProi IPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTi SM00642. Aamy. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ympImported.

    Entry informationi

    Entry nameiA4XX20_PSEMY
    AccessioniPrimary (citable) accession number: A4XX20
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 29, 2007
    Last sequence update: May 29, 2007
    Last modified: October 1, 2014
    This is version 44 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3