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A4XX20 (A4XX20_PSEMY) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Pmen_3133 EMBL ABP85886.1
OrganismPseudomonas mendocina (strain ymp) [Complete proteome] [HAMAP] EMBL ABP85886.1
Taxonomic identifier399739 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length687 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Potential EMBL ABP85886.1
Chain26 – 687662 Potential EMBL ABP85886.1
PRO_5000240748

Sequences

Sequence LengthMass (Da)Tools
A4XX20 [UniParc].

Last modified May 29, 2007. Version 1.
Checksum: 6F961366AD1730AF

FASTA68776,853
        10         20         30         40         50         60 
MRRPSLPTSL TTLACALLCQ FASAEPQLQA WLDQRPVPLQ WSNPAPQRYS VELELSAGQL 

        70         80         90        100        110        120 
RLQAPNASGS AQPLALYQRQ DWHARSSLSL QIGEPGRYRL LFQEDAQPHL RLLPLREQAP 

       130        140        150        160        170        180 
RSACRTWQGE ALSVAVGQVF ADGEVLRDAY SGQLATVENG RIELTPAAHS DGLLLLEPAE 

       190        200        210        220        230        240 
PAPAPAHDWR NATVYFAITD RFANGDTGND RSYGRQPDGE QEIGTFHGGD LRGLTGKLDY 

       250        260        270        280        290        300 
LQQLGVNALW ISAPFEQIHG WVGGGDKGDF RHYAYHGYYA LDFTRLDANM GTEDELRELI 

       310        320        330        340        350        360 
AQAHARGIRV LFDVVLNHPG YSTLADMQVL GFGALRGGMD QYLPPRWSDW QPESFENLHA 

       370        380        390        400        410        420 
YHNLIDYQHD AWRQWWGKDW VRADIADYDS PPSVLVDPRQ GSLAFLPDFK TESQQPVSLP 

       430        440        450        460        470        480 
PFLLRKADTR AVPREGYRVR DYLVEWLSFW VREFGVDGFR ADTVKHVELE SWAALRQAAD 

       490        500        510        520        530        540 
KARAEWSAAN PDDPMSGSPF WMVGEVFGHG PQASVYQDHG FDALINFDFQ GELAARGSEC 

       550        560        570        580        590        600 
LRQVEDGYRD YAELLANDAR HNFMSYASSH DTSLFFAEQG ERLARQRGLA CALLLAPGAV 

       610        620        630        640        650        660 
QIYYGDESAR PLGPTGSDPH QGTRSSMNWD AQQQAPVAEL LAHWRLLGQF RARHPAIGAG 

       670        680 
RHQQLSSQPY AFARTLGKDR VVIVQGR 

« Hide

References

[1]"Complete sequence of Pseudomonas mendocina ymp."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Detter J.C., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Mikhailova N., Hersman L., Dubois J., Maurice P., Richardson P.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ymp.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000680 Genomic DNA. Translation: ABP85886.1.
RefSeqYP_001188618.1. NC_009439.1.

3D structure databases

ProteinModelPortalA4XX20.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING399739.Pmen_3133.

Protein family/group databases

CAZyGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABP85886; ABP85886; Pmen_3133.
GeneID5107455.
KEGGpmy:Pmen_3133.
PATRIC19912870. VBIPseMen131592_3175.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHOG000273912.
KOK01176.
OMAGQNWHSF.
OrthoDBEOG65QWH3.
ProtClustDBPRK09505.

Enzyme and pathway databases

BioCycPMEN399739:GHR6-3192-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 2 hits.
InterProIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA4XX20_PSEMY
AccessionPrimary (citable) accession number: A4XX20
Entry history
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: November 13, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)