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A4XWS2

- KDSA_PSEMY

UniProt

A4XWS2 - KDSA_PSEMY

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Protein

2-dehydro-3-deoxyphosphooctonate aldolase

Gene

kdsA

Organism
Pseudomonas mendocina (strain ymp)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate.UniRule annotation

Pathwayi

GO - Molecular functioni

  1. 3-deoxy-8-phosphooctulonate synthase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. keto-3-deoxy-D-manno-octulosonic acid biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Transferase

Keywords - Biological processi

Lipopolysaccharide biosynthesis

Enzyme and pathway databases

BioCyciPMEN399739:GHR6-3093-MONOMER.
UniPathwayiUPA00030.
UPA00357; UER00474.

Names & Taxonomyi

Protein namesi
Recommended name:
2-dehydro-3-deoxyphosphooctonate aldolaseUniRule annotation (EC:2.5.1.55UniRule annotation)
Alternative name(s):
3-deoxy-D-manno-octulosonic acid 8-phosphate synthaseUniRule annotation
KDO-8-phosphate synthaseUniRule annotation
Short name:
KDO 8-P synthaseUniRule annotation
Short name:
KDOPSUniRule annotation
Phospho-2-dehydro-3-deoxyoctonate aldolaseUniRule annotation
Gene namesi
Name:kdsAUniRule annotation
Ordered Locus Names:Pmen_3034
OrganismiPseudomonas mendocina (strain ymp)
Taxonomic identifieri399739 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000229: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 2812812-dehydro-3-deoxyphosphooctonate aldolasePRO_1000057397Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi399739.Pmen_3034.

Structurei

3D structure databases

ProteinModelPortaliA4XWS2.
SMRiA4XWS2. Positions 1-281.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the KdsA family.UniRule annotation

Phylogenomic databases

eggNOGiCOG2877.
HOGENOMiHOG000023021.
KOiK01627.
OMAiANDKPMV.
OrthoDBiEOG680X4R.

Family and domain databases

Gene3Di3.20.20.70. 1 hit.
HAMAPiMF_00056. KDO8P_synth.
InterProiIPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view]
PANTHERiPTHR21057:SF2. PTHR21057:SF2. 1 hit.
PfamiPF00793. DAHP_synth_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01362. KDO8P_synth. 1 hit.

Sequencei

Sequence statusi: Complete.

A4XWS2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAQKIIKVRD IEIANDKPFV LFGGINVLES RDLAMQACEE YVRVTEKLGI
60 70 80 90 100
PYVFKASFDK ANRSSITSFR GPGLEEGMKI FEEVKKTFGV PVITDVHEPH
110 120 130 140 150
QAAAVAEVCD IIQLPAFLSR QTDLVVAMAK TGAVINIKKA QFLAPQEMKH
160 170 180 190 200
ILTKCEEAGN DQLILCERGS SFGYNNLVVD MLGFGIMKQF EYPVFFDVTH
210 220 230 240 250
ALQMPGGRAD SAGGRRAQVT DLAKAGMSQG LAGLFLEAHP DPENAKCDGP
260 270 280
CALRLNKLEP FLSQLKQLDD LVKSFPPIET A
Length:281
Mass (Da):30,833
Last modified:May 29, 2007 - v1
Checksum:i3B224888594A12D3
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000680 Genomic DNA. Translation: ABP85788.1.
RefSeqiYP_001188520.1. NC_009439.1.

Genome annotation databases

EnsemblBacteriaiABP85788; ABP85788; Pmen_3034.
GeneIDi5107514.
KEGGipmy:Pmen_3034.
PATRICi19912680. VBIPseMen131592_3080.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000680 Genomic DNA. Translation: ABP85788.1 .
RefSeqi YP_001188520.1. NC_009439.1.

3D structure databases

ProteinModelPortali A4XWS2.
SMRi A4XWS2. Positions 1-281.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 399739.Pmen_3034.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABP85788 ; ABP85788 ; Pmen_3034 .
GeneIDi 5107514.
KEGGi pmy:Pmen_3034.
PATRICi 19912680. VBIPseMen131592_3080.

Phylogenomic databases

eggNOGi COG2877.
HOGENOMi HOG000023021.
KOi K01627.
OMAi ANDKPMV.
OrthoDBi EOG680X4R.

Enzyme and pathway databases

UniPathwayi UPA00030 .
UPA00357 ; UER00474 .
BioCyci PMEN399739:GHR6-3093-MONOMER.

Family and domain databases

Gene3Di 3.20.20.70. 1 hit.
HAMAPi MF_00056. KDO8P_synth.
InterProi IPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view ]
PANTHERi PTHR21057:SF2. PTHR21057:SF2. 1 hit.
Pfami PF00793. DAHP_synth_1. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR01362. KDO8P_synth. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ymp.

Entry informationi

Entry nameiKDSA_PSEMY
AccessioniPrimary (citable) accession number: A4XWS2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: May 29, 2007
Last modified: October 29, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3