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A4XWS2

- KDSA_PSEMY

UniProt

A4XWS2 - KDSA_PSEMY

Protein

2-dehydro-3-deoxyphosphooctonate aldolase

Gene

kdsA

Organism
Pseudomonas mendocina (strain ymp)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 48 (01 Oct 2014)
      Sequence version 1 (29 May 2007)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate.UniRule annotation

    Pathwayi

    GO - Molecular functioni

    1. 3-deoxy-8-phosphooctulonate synthase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. keto-3-deoxy-D-manno-octulosonic acid biosynthetic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Transferase

    Keywords - Biological processi

    Lipopolysaccharide biosynthesis

    Enzyme and pathway databases

    BioCyciPMEN399739:GHR6-3093-MONOMER.
    UniPathwayiUPA00030.
    UPA00357; UER00474.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    2-dehydro-3-deoxyphosphooctonate aldolaseUniRule annotation (EC:2.5.1.55UniRule annotation)
    Alternative name(s):
    3-deoxy-D-manno-octulosonic acid 8-phosphate synthaseUniRule annotation
    KDO-8-phosphate synthaseUniRule annotation
    Short name:
    KDO 8-P synthaseUniRule annotation
    Short name:
    KDOPSUniRule annotation
    Phospho-2-dehydro-3-deoxyoctonate aldolaseUniRule annotation
    Gene namesi
    Name:kdsAUniRule annotation
    Ordered Locus Names:Pmen_3034
    OrganismiPseudomonas mendocina (strain ymp)
    Taxonomic identifieri399739 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000000229: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 2812812-dehydro-3-deoxyphosphooctonate aldolasePRO_1000057397Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi399739.Pmen_3034.

    Structurei

    3D structure databases

    ProteinModelPortaliA4XWS2.
    SMRiA4XWS2. Positions 1-281.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the KdsA family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG2877.
    HOGENOMiHOG000023021.
    KOiK01627.
    OMAiANDKPMV.
    OrthoDBiEOG680X4R.

    Family and domain databases

    Gene3Di3.20.20.70. 1 hit.
    HAMAPiMF_00056. KDO8P_synth.
    InterProiIPR013785. Aldolase_TIM.
    IPR006218. DAHP1/KDSA.
    IPR006269. KDO8P_synthase.
    [Graphical view]
    PANTHERiPTHR21057:SF2. PTHR21057:SF2. 1 hit.
    PfamiPF00793. DAHP_synth_1. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR01362. KDO8P_synth. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A4XWS2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAQKIIKVRD IEIANDKPFV LFGGINVLES RDLAMQACEE YVRVTEKLGI    50
    PYVFKASFDK ANRSSITSFR GPGLEEGMKI FEEVKKTFGV PVITDVHEPH 100
    QAAAVAEVCD IIQLPAFLSR QTDLVVAMAK TGAVINIKKA QFLAPQEMKH 150
    ILTKCEEAGN DQLILCERGS SFGYNNLVVD MLGFGIMKQF EYPVFFDVTH 200
    ALQMPGGRAD SAGGRRAQVT DLAKAGMSQG LAGLFLEAHP DPENAKCDGP 250
    CALRLNKLEP FLSQLKQLDD LVKSFPPIET A 281
    Length:281
    Mass (Da):30,833
    Last modified:May 29, 2007 - v1
    Checksum:i3B224888594A12D3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000680 Genomic DNA. Translation: ABP85788.1.
    RefSeqiYP_001188520.1. NC_009439.1.

    Genome annotation databases

    EnsemblBacteriaiABP85788; ABP85788; Pmen_3034.
    GeneIDi5107514.
    KEGGipmy:Pmen_3034.
    PATRICi19912680. VBIPseMen131592_3080.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000680 Genomic DNA. Translation: ABP85788.1 .
    RefSeqi YP_001188520.1. NC_009439.1.

    3D structure databases

    ProteinModelPortali A4XWS2.
    SMRi A4XWS2. Positions 1-281.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 399739.Pmen_3034.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABP85788 ; ABP85788 ; Pmen_3034 .
    GeneIDi 5107514.
    KEGGi pmy:Pmen_3034.
    PATRICi 19912680. VBIPseMen131592_3080.

    Phylogenomic databases

    eggNOGi COG2877.
    HOGENOMi HOG000023021.
    KOi K01627.
    OMAi ANDKPMV.
    OrthoDBi EOG680X4R.

    Enzyme and pathway databases

    UniPathwayi UPA00030 .
    UPA00357 ; UER00474 .
    BioCyci PMEN399739:GHR6-3093-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.70. 1 hit.
    HAMAPi MF_00056. KDO8P_synth.
    InterProi IPR013785. Aldolase_TIM.
    IPR006218. DAHP1/KDSA.
    IPR006269. KDO8P_synthase.
    [Graphical view ]
    PANTHERi PTHR21057:SF2. PTHR21057:SF2. 1 hit.
    Pfami PF00793. DAHP_synth_1. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR01362. KDO8P_synth. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ymp.

    Entry informationi

    Entry nameiKDSA_PSEMY
    AccessioniPrimary (citable) accession number: A4XWS2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 5, 2008
    Last sequence update: May 29, 2007
    Last modified: October 1, 2014
    This is version 48 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3