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A4XUY7 (A4XUY7_PSEMY) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Isocitrate dehydrogenase, NADP-dependent EMBL ABP85153.1
EC=1.1.1.42 EMBL ABP85153.1
Gene names
Ordered Locus Names:Pmen_2397
OrganismPseudomonas mendocina (strain ymp) [Complete proteome] [HAMAP] EMBL ABP85153.1
Taxonomic identifier399739 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas ›

Protein attributes

Sequence length742 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. PIRSR PIRSR009407-3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region133 – 1408Substrate binding By similarity PIRSR PIRSR009407-2

Sites

Metal binding3501Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5481Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5521Magnesium or manganese By similarity PIRSR PIRSR009407-3
Binding site1461Substrate By similarity PIRSR PIRSR009407-2
Binding site5471Substrate By similarity PIRSR PIRSR009407-2
Site2551Critical for catalysis By similarity PIRSR PIRSR009407-1
Site4201Critical for catalysis By similarity PIRSR PIRSR009407-1

Sequences

Sequence LengthMass (Da)Tools
A4XUY7 [UniParc].

Last modified May 29, 2007. Version 1.
Checksum: 0AF83F12B252FA9C

FASTA74281,923
        10         20         30         40         50         60 
MSTPSKIIYT FTDEAPALAT YSLLPIVEAF AASADISVET RDISLAGRIL ASFADRLDAD 

        70         80         90        100        110        120 
KRIDDDLAKL AELTLQPDAN IIKLPNISAS VPQLKAAIAE LQAQGYNIPD FPEDPQSEED 

       130        140        150        160        170        180 
KEVRARYAKV LGSAVNPVLR EGNSDRRAPA AVKAYARKHP HSMGKWSMAS QSHADYMRGG 

       190        200        210        220        230        240 
DFFSSEQSIT MAKAGDVRIE FVGKDGKVEV KKQLALQEGE VFDSMFMSCR KLRDFFEKTL 

       250        260        270        280        290        300 
QDCKETGVMW SLHVKATMMK VSHPIVFGHA VSVYYKDVFD KYGELFKELG VNPNNGISSV 

       310        320        330        340        350        360 
YDKIKALPAS QQEEILHDIH EVYSHRPEMA MVDSVKGITN LHIPSDVIVD ASMPAMIRNS 

       370        380        390        400        410        420 
GQMWGKDGKQ KDTKAVMPES TYARIYQEMI NFCKTNGAFD PTTMGSVPNV GLMAQKAEEY 

       430        440        450        460        470        480 
GSHDKTFEMT ADGTMRVVAA DGTVLMQHQV EAGDIWRACQ TKDAPIRDWV KLAVTRARQS 

       490        500        510        520        530        540 
NTPAIFWLDP ERAHDRELQK KVELYLKDHD LTGLDIRMMG YNEAIRVSME RMIRGLDTIS 

       550        560        570        580        590        600 
VTGNVLRDYL TDLFPIMELG TSAKMLSIVP LMAGGGMYET GAGGSAPKHV QQLVEENYLR 

       610        620        630        640        650        660 
WDSLGEFLAL AVSLEETGIK TNNAKAKVLG KTLDQATGKL LDNNKSPARK VGEIDNRGSH 

       670        680        690        700        710        720 
FYLALYWAQA LAEQNDDAEL KAHFAPLAKQ LTEQEATIVG ELAAVQGKPV DIGGYYRSNP 

       730        740 
ELTSQVMRPS ATFNAALAAL NA

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References

[1]"Complete sequence of Pseudomonas mendocina ymp."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Detter J.C., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Mikhailova N., Hersman L., Dubois J., Maurice P., Richardson P.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ymp.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000680 Genomic DNA. Translation: ABP85153.1.
RefSeqYP_001187885.1. NC_009439.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING399739.Pmen_2397.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABP85153; ABP85153; Pmen_2397.
GeneID5108237.
KEGGpmy:Pmen_2397.
PATRIC19911329. VBIPseMen131592_2419.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2838.
HOGENOMHOG000240860.
KOK00031.
OMAPRTMGTV.
ProtClustDBCLSK867411.

Enzyme and pathway databases

BioCycPMEN399739:GHR6-2477-MONOMER.

Family and domain databases

Gene3D3.40.718.10. 3 hits.
InterProIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamPF03971. IDH. 1 hit.
[Graphical view]
PIRSFPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsTIGR00178. monomer_idh. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA4XUY7_PSEMY
AccessionPrimary (citable) accession number: A4XUY7
Entry history
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: May 1, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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