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A4XUD9 (A4XUD9_PSEMY) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Pmen_2195 EMBL ABP84955.1
OrganismPseudomonas mendocina (strain ymp) [Complete proteome] [HAMAP] EMBL ABP84955.1
Taxonomic identifier399739 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length552 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
A4XUD9 [UniParc].

Last modified May 29, 2007. Version 1.
Checksum: E52E21F5E1A0ABAF

FASTA55262,293
        10         20         30         40         50         60 
MKAFAELYAR LDATTSSNAK LQAMQEYFAE APPADAAWAV YFLAGGRPRQ VVPTRVLREL 

        70         80         90        100        110        120 
ATRLAGLSDW LFEESYQAVG DLAETIALLL PESQHASEQG LAWWLEEQLL PLRGLPPAEL 

       130        140        150        160        170        180 
AERLPPLWAQ LDRPSLMVSL KLLTGAFRVG VSKLLVTRAL AGLAQIDAKR VAQRLVGYTD 

       190        200        210        220        230        240 
LSHRPSAQRY LALIAAESED EHAQRGGQPY PFFLAHPLQQ PLEQFDAQLG PASDWLVEWK 

       250        260        270        280        290        300 
WDGIRAQLVK RDGRLWLWSR GEELITERFP ELHELAEALP DGSVLDGELV AWKEPATGSG 

       310        320        330        340        350        360 
AVFGIQPFAL LQQRIGRKTL SKKLLEEVPA ALLAYDLLEW RGEDWRSRPQ DERRARLELL 

       370        380        390        400        410        420 
VAEVGDARLQ LSPQLTGRDW QDFARQREAS RELGVEGMML KRRDSLYGVG RTRDLGLWWK 

       430        440        450        460        470        480 
WKIDPFSVDA VLIYAQRGHG RRASLYSDYT FAVWDDSTPG ERVLVPFAKA YSGLTDDEMR 

       490        500        510        520        530        540 
KVDAIIRKTT VEKFGPVRSV TPTLVFELGF EGIALSKRHK SGVAVRFPRM LRWRTDKRVE 

       550 
DADTLATLQG LL 

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References

[1]"Complete sequence of Pseudomonas mendocina ymp."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Detter J.C., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Mikhailova N., Hersman L., Dubois J., Maurice P., Richardson P.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ymp.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000680 Genomic DNA. Translation: ABP84955.1.
RefSeqYP_001187687.1. NC_009439.1.

3D structure databases

ProteinModelPortalA4XUD9.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING399739.Pmen_2195.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABP84955; ABP84955; Pmen_2195.
GeneID5109140.
KEGGpmy:Pmen_2195.
PATRIC19910925. VBIPseMen131592_2221.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036007.
KOK01971.
OMAGQPYPFF.
OrthoDBEOG6Q8HXT.
ProtClustDBPRK09247.

Enzyme and pathway databases

BioCycPMEN399739:GHR6-2235-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA4XUD9_PSEMY
AccessionPrimary (citable) accession number: A4XUD9
Entry history
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: November 13, 2013
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)