A4XUD9 (A4XUD9_PSEMY) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ABP84955.1

Gene names

Ordered Locus Names:

Pmen_2195

Organism

Pseudomonas mendocina (strain ymp) [Complete proteome] [HAMAP] EMBL ABP84955.1

Taxonomic identifier

399739 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas aeruginosa group › Pseudomonas mendocina

Protein attributes

Sequence length	552 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABP84955.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A4XUD9 [UniParc]. Last modified May 29, 2007. Version 1. Checksum: E52E21F5E1A0ABAF	FASTA	552	62,293
	10 20 30 40 50 60 MKAFAELYAR LDATTSSNAK LQAMQEYFAE APPADAAWAV YFLAGGRPRQ VVPTRVLREL 70 80 90 100 110 120 ATRLAGLSDW LFEESYQAVG DLAETIALLL PESQHASEQG LAWWLEEQLL PLRGLPPAEL 130 140 150 160 170 180 AERLPPLWAQ LDRPSLMVSL KLLTGAFRVG VSKLLVTRAL AGLAQIDAKR VAQRLVGYTD 190 200 210 220 230 240 LSHRPSAQRY LALIAAESED EHAQRGGQPY PFFLAHPLQQ PLEQFDAQLG PASDWLVEWK 250 260 270 280 290 300 WDGIRAQLVK RDGRLWLWSR GEELITERFP ELHELAEALP DGSVLDGELV AWKEPATGSG 310 320 330 340 350 360 AVFGIQPFAL LQQRIGRKTL SKKLLEEVPA ALLAYDLLEW RGEDWRSRPQ DERRARLELL 370 380 390 400 410 420 VAEVGDARLQ LSPQLTGRDW QDFARQREAS RELGVEGMML KRRDSLYGVG RTRDLGLWWK 430 440 450 460 470 480 WKIDPFSVDA VLIYAQRGHG RRASLYSDYT FAVWDDSTPG ERVLVPFAKA YSGLTDDEMR 490 500 510 520 530 540 KVDAIIRKTT VEKFGPVRSV TPTLVFELGF EGIALSKRHK SGVAVRFPRM LRWRTDKRVE 550 DADTLATLQG LL

References

[1]

"Complete sequence of Pseudomonas mendocina ymp." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Detter J.C., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. , Mikhailova N., Hersman L., Dubois J., Maurice P., Richardson P. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ymp.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000680 Genomic DNA. Translation: ABP84955.1.
RefSeq	YP_001187687.1. NC_009439.1.
3D structure databases
ProteinModelPortal	A4XUD9.
ModBase	Search...
Protein-protein interaction databases
STRING	399739.Pmen_2195.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABP84955; ABP84955; Pmen_2195.
GeneID	5109140.
KEGG	pmy:Pmen_2195.
PATRIC	19910925. VBIPseMen131592_2221.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Enzyme and pathway databases
BioCyc	PMEN399739:GHR6-2275-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A4XUD9_PSEMY

Accession

Primary (citable) accession number: A4XUD9

Entry history

Integrated into UniProtKB/TrEMBL:	May 29, 2007
Last sequence update:	May 29, 2007
Last modified:	May 1, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)