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A4XUD9

- A4XUD9_PSEMY

UniProt

A4XUD9 - A4XUD9_PSEMY

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Pmen_2195

Organism
Pseudomonas mendocina (strain ymp)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 51 (01 Oct 2014)
      Sequence version 1 (29 May 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPMEN399739:GHR6-2235-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Pmen_2195Imported
    OrganismiPseudomonas mendocina (strain ymp)Imported
    Taxonomic identifieri399739 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000000229: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi399739.Pmen_2195.

    Structurei

    3D structure databases

    ProteinModelPortaliA4XUD9.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiRVWLWSR.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A4XUD9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKAFAELYAR LDATTSSNAK LQAMQEYFAE APPADAAWAV YFLAGGRPRQ    50
    VVPTRVLREL ATRLAGLSDW LFEESYQAVG DLAETIALLL PESQHASEQG 100
    LAWWLEEQLL PLRGLPPAEL AERLPPLWAQ LDRPSLMVSL KLLTGAFRVG 150
    VSKLLVTRAL AGLAQIDAKR VAQRLVGYTD LSHRPSAQRY LALIAAESED 200
    EHAQRGGQPY PFFLAHPLQQ PLEQFDAQLG PASDWLVEWK WDGIRAQLVK 250
    RDGRLWLWSR GEELITERFP ELHELAEALP DGSVLDGELV AWKEPATGSG 300
    AVFGIQPFAL LQQRIGRKTL SKKLLEEVPA ALLAYDLLEW RGEDWRSRPQ 350
    DERRARLELL VAEVGDARLQ LSPQLTGRDW QDFARQREAS RELGVEGMML 400
    KRRDSLYGVG RTRDLGLWWK WKIDPFSVDA VLIYAQRGHG RRASLYSDYT 450
    FAVWDDSTPG ERVLVPFAKA YSGLTDDEMR KVDAIIRKTT VEKFGPVRSV 500
    TPTLVFELGF EGIALSKRHK SGVAVRFPRM LRWRTDKRVE DADTLATLQG 550
    LL 552
    Length:552
    Mass (Da):62,293
    Last modified:May 29, 2007 - v1
    Checksum:iE52E21F5E1A0ABAF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000680 Genomic DNA. Translation: ABP84955.1.
    RefSeqiYP_001187687.1. NC_009439.1.

    Genome annotation databases

    EnsemblBacteriaiABP84955; ABP84955; Pmen_2195.
    GeneIDi5109140.
    KEGGipmy:Pmen_2195.
    PATRICi19910925. VBIPseMen131592_2221.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000680 Genomic DNA. Translation: ABP84955.1 .
    RefSeqi YP_001187687.1. NC_009439.1.

    3D structure databases

    ProteinModelPortali A4XUD9.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 399739.Pmen_2195.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABP84955 ; ABP84955 ; Pmen_2195 .
    GeneIDi 5109140.
    KEGGi pmy:Pmen_2195.
    PATRICi 19910925. VBIPseMen131592_2221.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi RVWLWSR.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci PMEN399739:GHR6-2235-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ympImported.

    Entry informationi

    Entry nameiA4XUD9_PSEMY
    AccessioniPrimary (citable) accession number: A4XUD9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 29, 2007
    Last sequence update: May 29, 2007
    Last modified: October 1, 2014
    This is version 51 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3