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A4XUD9

- A4XUD9_PSEMY

UniProt

A4XUD9 - A4XUD9_PSEMY

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Protein
Submitted name: ATP dependent DNA ligase
Gene
Pmen_2195
Organism
Pseudomonas mendocina (strain ymp)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPMEN399739:GHR6-2235-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Pmen_2195Imported
OrganismiPseudomonas mendocina (strain ymp)Imported
Taxonomic identifieri399739 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000229: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi399739.Pmen_2195.

Structurei

3D structure databases

ProteinModelPortaliA4XUD9.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiRVWLWSR.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4XUD9-1 [UniParc]FASTAAdd to Basket

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MKAFAELYAR LDATTSSNAK LQAMQEYFAE APPADAAWAV YFLAGGRPRQ    50
VVPTRVLREL ATRLAGLSDW LFEESYQAVG DLAETIALLL PESQHASEQG 100
LAWWLEEQLL PLRGLPPAEL AERLPPLWAQ LDRPSLMVSL KLLTGAFRVG 150
VSKLLVTRAL AGLAQIDAKR VAQRLVGYTD LSHRPSAQRY LALIAAESED 200
EHAQRGGQPY PFFLAHPLQQ PLEQFDAQLG PASDWLVEWK WDGIRAQLVK 250
RDGRLWLWSR GEELITERFP ELHELAEALP DGSVLDGELV AWKEPATGSG 300
AVFGIQPFAL LQQRIGRKTL SKKLLEEVPA ALLAYDLLEW RGEDWRSRPQ 350
DERRARLELL VAEVGDARLQ LSPQLTGRDW QDFARQREAS RELGVEGMML 400
KRRDSLYGVG RTRDLGLWWK WKIDPFSVDA VLIYAQRGHG RRASLYSDYT 450
FAVWDDSTPG ERVLVPFAKA YSGLTDDEMR KVDAIIRKTT VEKFGPVRSV 500
TPTLVFELGF EGIALSKRHK SGVAVRFPRM LRWRTDKRVE DADTLATLQG 550
LL 552
Length:552
Mass (Da):62,293
Last modified:May 29, 2007 - v1
Checksum:iE52E21F5E1A0ABAF
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000680 Genomic DNA. Translation: ABP84955.1.
RefSeqiYP_001187687.1. NC_009439.1.

Genome annotation databases

EnsemblBacteriaiABP84955; ABP84955; Pmen_2195.
GeneIDi5109140.
KEGGipmy:Pmen_2195.
PATRICi19910925. VBIPseMen131592_2221.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000680 Genomic DNA. Translation: ABP84955.1 .
RefSeqi YP_001187687.1. NC_009439.1.

3D structure databases

ProteinModelPortali A4XUD9.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 399739.Pmen_2195.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABP84955 ; ABP84955 ; Pmen_2195 .
GeneIDi 5109140.
KEGGi pmy:Pmen_2195.
PATRICi 19910925. VBIPseMen131592_2221.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi RVWLWSR.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci PMEN399739:GHR6-2235-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ymp.

Entry informationi

Entry nameiA4XUD9_PSEMY
AccessioniPrimary (citable) accession number: A4XUD9
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: May 14, 2014
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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