Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

ATP dependent DNA ligase

Gene

Pmen_2195

Organism
Pseudomonas mendocina (strain ymp)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPMEN399739:GHR6-2235-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Pmen_2195Imported
OrganismiPseudomonas mendocina (strain ymp)Imported
Taxonomic identifieri399739 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000229 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi399739.Pmen_2195.

Structurei

3D structure databases

ProteinModelPortaliA4XUD9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4XUD9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAFAELYAR LDATTSSNAK LQAMQEYFAE APPADAAWAV YFLAGGRPRQ
60 70 80 90 100
VVPTRVLREL ATRLAGLSDW LFEESYQAVG DLAETIALLL PESQHASEQG
110 120 130 140 150
LAWWLEEQLL PLRGLPPAEL AERLPPLWAQ LDRPSLMVSL KLLTGAFRVG
160 170 180 190 200
VSKLLVTRAL AGLAQIDAKR VAQRLVGYTD LSHRPSAQRY LALIAAESED
210 220 230 240 250
EHAQRGGQPY PFFLAHPLQQ PLEQFDAQLG PASDWLVEWK WDGIRAQLVK
260 270 280 290 300
RDGRLWLWSR GEELITERFP ELHELAEALP DGSVLDGELV AWKEPATGSG
310 320 330 340 350
AVFGIQPFAL LQQRIGRKTL SKKLLEEVPA ALLAYDLLEW RGEDWRSRPQ
360 370 380 390 400
DERRARLELL VAEVGDARLQ LSPQLTGRDW QDFARQREAS RELGVEGMML
410 420 430 440 450
KRRDSLYGVG RTRDLGLWWK WKIDPFSVDA VLIYAQRGHG RRASLYSDYT
460 470 480 490 500
FAVWDDSTPG ERVLVPFAKA YSGLTDDEMR KVDAIIRKTT VEKFGPVRSV
510 520 530 540 550
TPTLVFELGF EGIALSKRHK SGVAVRFPRM LRWRTDKRVE DADTLATLQG

LL
Length:552
Mass (Da):62,293
Last modified:May 29, 2007 - v1
Checksum:iE52E21F5E1A0ABAF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000680 Genomic DNA. Translation: ABP84955.1.
RefSeqiWP_012018590.1. NC_009439.1.

Genome annotation databases

EnsemblBacteriaiABP84955; ABP84955; Pmen_2195.
GeneIDi5109140.
KEGGipmy:Pmen_2195.
PATRICi19910925. VBIPseMen131592_2221.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000680 Genomic DNA. Translation: ABP84955.1.
RefSeqiWP_012018590.1. NC_009439.1.

3D structure databases

ProteinModelPortaliA4XUD9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi399739.Pmen_2195.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABP84955; ABP84955; Pmen_2195.
GeneIDi5109140.
KEGGipmy:Pmen_2195.
PATRICi19910925. VBIPseMen131592_2221.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciPMEN399739:GHR6-2235-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ympImported.

Entry informationi

Entry nameiA4XUD9_PSEMY
AccessioniPrimary (citable) accession number: A4XUD9
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: July 22, 2015
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.