A4XU08 (A4XU08_PSEMY) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Lytic transglycosylase, catalytic EMBL ABP84824.1

Gene names

Ordered Locus Names:

Pmen_2063

Organism

Pseudomonas mendocina (strain ymp) [Complete proteome] [HAMAP] EMBL ABP84824.1

Taxonomic identifier

399739 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

Protein attributes

Sequence length	498 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cell wall macromolecule catabolic process Inferred from electronic annotation. Source: InterPro peptidoglycan metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	membrane Inferred from electronic annotation. Source: InterPro
Molecular function	lytic transglycosylase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A4XU08 [UniParc]. Last modified May 29, 2007. Version 1. Checksum: 46D75D0660DDF037	FASTA	498	56,180
	10 20 30 40 50 60 MILAGCQSLP SDTPDRSADT SRAVGLEREP EWLNNQVKPR EYTDIWERMR DGFKLQDEIG 70 80 90 100 110 120 INPRIERLRL WYASNPRHVD TVSERSAPYI HYIVERLAER DMPMELALLP VIESAYDPQA 130 140 150 160 170 180 YSSAHAVGLW QFIPSTGRHY NLRQTNWYDG RRDVTASTQA ALNYLSRLHE MFNGDWLLAL 190 200 210 220 230 240 AAYNAGEGRI SRAIERNEKL GLPSDYWNLS LPKETEDYVP KLLALSQVIL TPEAYGVTLS 250 260 270 280 290 300 PIANEPYFEQ VAIKQHMDLS RVAKLADLDE QELLQLNPAY KRGITLDGPQ HLLVPTEKAE 310 320 330 340 350 360 LLSANLALMK PQELVDWQSY TVRSGDSLHG IANRHHLSVS MLKDVNRLSG NNLRIGQVLT 370 380 390 400 410 420 IPGKPGVQPS EPLYQQRSVA QAPAAHTYQV KNGDNLWQIA RANQVAVHDL QRWNKLQGNQ 430 440 450 460 470 480 LKVGQVLNLT EPGAGATQVA SAKPASSARD KATYYRVQQG DSLYVIAKRF KIDLKRLQAW 490 NPRSSTLRPG QTVTLFLP

References

[1]

"Complete sequence of Pseudomonas mendocina ymp." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Detter J.C., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. , Mikhailova N., Hersman L., Dubois J., Maurice P., Richardson P. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ymp.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000680 Genomic DNA. Translation: ABP84824.1.
RefSeq	YP_001187556.1. NC_009439.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	A4XU08.
Protein family/group databases
CAZy	GH23. Glycoside Hydrolase Family 23.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5109797.
GenomeReviews	Gene locus Pmen_2063 in contig CP000680_GR.
KEGG	pmy:Pmen_2063.
PATRIC	19910665. VBIPseMen131592_2092.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0741.
HOGENOM	HBG519241.
OMA	KQNWWYD.
PhylomeDB	A4XU08.
ProtClustDB	CLSK866801.
Enzyme and pathway databases
BioCyc	PMEN399739:PMEN_2063-MONOMER.
Family and domain databases
InterPro	IPR023346. Lysozyme-like_dom. IPR008258. Lytic_TGlycosylase-like_cat. IPR018392. Peptidoglycan-bd_lysin. IPR002482. Peptidoglycan-bd_Lysin_subgr. IPR000189. Transglyc_AS. [Graphical view]
KO	K08307.
Pfam	PF01476. LysM. 3 hits. PF01464. SLT. 1 hit. [Graphical view]
SMART	SM00257. LysM. 3 hits. [Graphical view]
SUPFAM	SSF53955. SSF53955. 1 hit.
PROSITE	PS00922. TRANSGLYCOSYLASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A4XU08_PSEMY

Accession

Primary (citable) accession number: A4XU08

Entry history

Integrated into UniProtKB/TrEMBL:	May 29, 2007
Last sequence update:	May 29, 2007
Last modified:	December 14, 2011
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)