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A4XR26 (A4XR26_PSEMY) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Alginate lyase HAMAP MF_00557
EC=4.2.2.3 HAMAP MF_00557
Alternative name(s):
Poly(beta-D-mannuronate) lyase HAMAP MF_00557
Poly(mana) alginate lyase HAMAP MF_00557
Gene names
Name:algL HAMAP MF_00557
Ordered Locus Names:Pmen_1024
OrganismPseudomonas mendocina (strain ymp) [Complete proteome] [HAMAP] EMBL ABP83792.1
Taxonomic identifier399739 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

Protein attributes

Sequence length358 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Function

Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond By similarity. HAMAP MF_00557

Catalytic activity

Eliminative cleavage of polysaccharides containing beta-D-mannuronate residues to give oligosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enopyranuronosyl groups at their ends. HAMAP MF_00557

Subcellular location

Periplasm By similarity HAMAP MF_00557.

Sequence similarities

Belongs to the polysaccharide lyase 5 family. HAMAP MF_00557

Ontologies

Keywords
   Cellular componentPeriplasm HAMAP MF_00557
   DomainSignal HAMAP MF_00557 EMBL ABP83792.1
   Molecular functionLyase HAMAP MF_00557 EMBL ABP83792.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processalginic acid catabolic process

Inferred from electronic annotation. Source: HAMAP

   Cellular componentperiplasmic space

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionpoly(beta-D-mannuronate) lyase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2222 Potential EMBL ABP83792.1
Signal peptide1 – 2121 By similarity HAMAP MF_00557
Chain23 – 358336 Potential EMBL ABP83792.1
PRO_5000240228

Sequences

Sequence LengthMass (Da)Tools
A4XR26 [UniParc].

Last modified May 29, 2007. Version 1.
Checksum: 882C958D269D52B8

FASTA35840,264
        10         20         30         40         50         60 
MPRRLAPLTL LAVLLSAPAF AELQPPAGYH APVGQRDGKA PACSAPPQPY TGELQFTSKY 

        70         80         90        100        110        120 
AGSDSARATL NRNAEKNFRK QTEGITRLEK EAGRLITGYM RTGQRERLEC AIEWLDHWAS 

       130        140        150        160        170        180 
ADALESEQYN HTGKSMRKWA LGSLAGAWLR LKFSESQPLA DYPQQSERIE AWFVRLAEHT 

       190        200        210        220        230        240 
VREWSDLPLK KINNHSYWAA WSVMAVAVIG DRRDLFDWSV GQFRIAAGQV DDEGFLDNEM 

       250        260        270        280        290        300 
RRRQRALAYH NYALPPLAMI AAFAQANGVD LRGENHGALQ RLAERVLQGA RDPGAFAQRT 

       310        320        330        340        350 
GSRQDMEELR KKFKYAWLAP YCTLYVCNEQ TRELNQEMGP FNSFRLGGEV TQVFGGGG

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References

[1]"Complete sequence of Pseudomonas mendocina ymp."
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Detter J.C., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Mikhailova N., Hersman L., Dubois J., Maurice P., Richardson P.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ymp.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000680 Genomic DNA. Translation: ABP83792.1.
RefSeqYP_001186524.1. NC_009439.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGA4XR26.

Protein family/group databases

CAZyPL5. Polysaccharide Lyase Family 5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5108646.
GenomeReviewsGene locus Pmen_1024 in contig CP000680_GR.
KEGGpmy:Pmen_1024.
PATRIC19908491. VBIPseMen131592_1033.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG42597.
HOGENOMHBG336064.
OMAAAWSVMA.
ProtClustDBPRK00325.

Enzyme and pathway databases

BioCycPMEN399739:PMEN_1024-MONOMER.

Family and domain databases

HAMAPMF_00557. Alginate_lyase.
[Tree]
InterProIPR022859. Alginate_lyase.
IPR008397. Alginate_lyase_dom.
IPR008929. Chondroitin_lyas.
[Graphical view]
Gene3DG3DSA:1.50.10.110. Alginate_lyase. 1 hit.
KOK01729.
PfamPF05426. Alginate_lyase. 1 hit.
[Graphical view]
SUPFAMSSF48230. Chondroitin_lyas. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA4XR26_PSEMY
AccessionPrimary (citable) accession number: A4XR26
Entry history
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: December 14, 2011
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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