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Protein
Submitted name:

Poly(Beta-D-mannuronate) lyase

Gene

Pmen_1024

Organism
Pseudomonas mendocina (strain ymp)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Enzyme and pathway databases

BioCyciPMEN399739:GHR6-1034-MONOMER.

Protein family/group databases

CAZyiPL5. Polysaccharide Lyase Family 5.

Names & Taxonomyi

Protein namesi
Submitted name:
Poly(Beta-D-mannuronate) lyaseImported (EC:4.2.2.3Imported)
Gene namesi
Ordered Locus Names:Pmen_1024Imported
OrganismiPseudomonas mendocina (strain ymp)Imported
Taxonomic identifieri399739 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000000229 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121Sequence analysisAdd
BLAST
Chaini22 – 358337Sequence analysisPRO_5002677133Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi399739.Pmen_1024.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini55 – 296242Alginate_lyaseInterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105FN4. Bacteria.
ENOG4111N6J. LUCA.
HOGENOMiHOG000247392.
KOiK01729.
OMAiAAWSVMA.
OrthoDBiPOG091H0I15.

Family and domain databases

Gene3Di1.50.10.110. 1 hit.
HAMAPiMF_00557. Alginate_lyase. 1 hit.
InterProiIPR022859. Alginate_lyase.
IPR008397. Alginate_lyase_dom.
IPR008929. Chondroitin_lyas.
[Graphical view]
PfamiPF05426. Alginate_lyase. 1 hit.
[Graphical view]
SUPFAMiSSF48230. SSF48230. 1 hit.

Sequencei

Sequence statusi: Complete.

A4XR26-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRRLAPLTL LAVLLSAPAF AELQPPAGYH APVGQRDGKA PACSAPPQPY
60 70 80 90 100
TGELQFTSKY AGSDSARATL NRNAEKNFRK QTEGITRLEK EAGRLITGYM
110 120 130 140 150
RTGQRERLEC AIEWLDHWAS ADALESEQYN HTGKSMRKWA LGSLAGAWLR
160 170 180 190 200
LKFSESQPLA DYPQQSERIE AWFVRLAEHT VREWSDLPLK KINNHSYWAA
210 220 230 240 250
WSVMAVAVIG DRRDLFDWSV GQFRIAAGQV DDEGFLDNEM RRRQRALAYH
260 270 280 290 300
NYALPPLAMI AAFAQANGVD LRGENHGALQ RLAERVLQGA RDPGAFAQRT
310 320 330 340 350
GSRQDMEELR KKFKYAWLAP YCTLYVCNEQ TRELNQEMGP FNSFRLGGEV

TQVFGGGG
Length:358
Mass (Da):40,264
Last modified:May 29, 2007 - v1
Checksum:i882C958D269D52B8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000680 Genomic DNA. Translation: ABP83792.1.
RefSeqiWP_011921100.1. NC_009439.1.

Genome annotation databases

EnsemblBacteriaiABP83792; ABP83792; Pmen_1024.
GeneIDi5108646.
KEGGipmy:Pmen_1024.
PATRICi19908491. VBIPseMen131592_1033.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000680 Genomic DNA. Translation: ABP83792.1.
RefSeqiWP_011921100.1. NC_009439.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi399739.Pmen_1024.

Protein family/group databases

CAZyiPL5. Polysaccharide Lyase Family 5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABP83792; ABP83792; Pmen_1024.
GeneIDi5108646.
KEGGipmy:Pmen_1024.
PATRICi19908491. VBIPseMen131592_1033.

Phylogenomic databases

eggNOGiENOG4105FN4. Bacteria.
ENOG4111N6J. LUCA.
HOGENOMiHOG000247392.
KOiK01729.
OMAiAAWSVMA.
OrthoDBiPOG091H0I15.

Enzyme and pathway databases

BioCyciPMEN399739:GHR6-1034-MONOMER.

Family and domain databases

Gene3Di1.50.10.110. 1 hit.
HAMAPiMF_00557. Alginate_lyase. 1 hit.
InterProiIPR022859. Alginate_lyase.
IPR008397. Alginate_lyase_dom.
IPR008929. Chondroitin_lyas.
[Graphical view]
PfamiPF05426. Alginate_lyase. 1 hit.
[Graphical view]
SUPFAMiSSF48230. SSF48230. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiA4XR26_PSEMY
AccessioniPrimary (citable) accession number: A4XR26
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: September 7, 2016
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.