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Protein

Probable protein kinase UbiB

Gene

ubiB

Organism
Pseudomonas mendocina (strain ymp)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.UniRule annotation

Pathwayi: ubiquinone biosynthesis

This protein regulates the pathway ubiquinone biosynthesis, which is part of Cofactor biosynthesis.
View all proteins of this organism that are known to be involved in the pathway ubiquinone biosynthesis and in Cofactor biosynthesis.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei153ATPUniRule annotation1
Active sitei288Proton acceptorUniRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi131 – 139ATPUniRule annotation9

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionKinase, Transferase
Biological processUbiquinone biosynthesis
LigandATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciPMEN399739:G1G8Q-523-MONOMER
UniPathwayiUPA00232

Names & Taxonomyi

Protein namesi
Recommended name:
Probable protein kinase UbiBUniRule annotation (EC:2.7.-.-UniRule annotation)
Alternative name(s):
Ubiquinone biosynthesis protein UbiBUniRule annotation
Gene namesi
Name:ubiBUniRule annotation
Ordered Locus Names:Pmen_0521
OrganismiPseudomonas mendocina (strain ymp)
Taxonomic identifieri399739 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000000229 Componenti: Chromosome

Subcellular locationi

  • Cell inner membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei23 – 43HelicalUniRule annotationAdd BLAST21
Transmembranei504 – 524HelicalUniRule annotationAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000600681 – 527Probable protein kinase UbiBAdd BLAST527

Proteomic databases

PRIDEiA4XPM5

Interactioni

Protein-protein interaction databases

STRINGi399739.Pmen_0521

Structurei

3D structure databases

ProteinModelPortaliA4XPM5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini125 – 488Protein kinaseUniRule annotationAdd BLAST364

Sequence similaritiesi

Belongs to the ABC1 family. UbiB subfamily.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105CNK Bacteria
COG0661 LUCA
HOGENOMiHOG000264440
KOiK03688
OMAiDFGMMDQ
OrthoDBiPOG091H03ME

Family and domain databases

CDDicd13972 UbiB, 1 hit
HAMAPiMF_00414 UbiB, 1 hit
InterProiView protein in InterPro
IPR011009 Kinase-like_dom_sf
IPR010232 UbiB
IPR004147 UbiB_dom
PfamiView protein in Pfam
PF03109 ABC1, 1 hit
SUPFAMiSSF56112 SSF56112, 2 hits
TIGRFAMsiTIGR01982 UbiB, 1 hit

Sequencei

Sequence statusi: Complete.

A4XPM5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLLAVRRLL RIQRVVIRYQ LDELLLELPL PFWLRALSWL LPWRWLPRRP
60 70 80 90 100
LALSRGARLR LALEDLGPIF IKFGQLLSTR RDLLPPDIAD ELARLQDQVP
110 120 130 140 150
PFPEDQAIAL IERQLGAPVS QLFARFDSQP LASASVAQVH AAQLKSGEEV
160 170 180 190 200
VVKVVRPGLK PVIRQDLAWL FLLARIAERA SADARRLRPV EVVSDYEKTI
210 220 230 240 250
FDELDLLREA ANASQLRRNF EGSPLLYVPQ VYWDLCRHQV LVMERIYGVP
260 270 280 290 300
VTDLATLADQ RTDMKLLAER GVEIFFTQVF RDSFFHADMH PGNIFVSTRT
310 320 330 340 350
PWSPQYIAID CGIIGSLTDE DQDYLARNLI AFFKRDYRKV AQLHIDSGWV
360 370 380 390 400
PADTKVNEFE AAIRTVCEPI FEKPLKDISF GQLLLRLFQT ARRFNMEVQP
410 420 430 440 450
QLVLLQKTLL NIEGLGRQLY PDLDLWSTAQ PFLERWMRER VSPLHLLRNL
460 470 480 490 500
QQQAEQVPHL SQIARDALER LQRPEPPRES DARDQWPLRL LGAALIAAGA
510 520
VQGLAPLLAT WPAWLMVGGG LYLVLRR
Length:527
Mass (Da):60,521
Last modified:May 29, 2007 - v1
Checksum:iD39B37042E7034B5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000680 Genomic DNA Translation: ABP83291.1
RefSeqiWP_011920746.1, NC_009439.1

Genome annotation databases

EnsemblBacteriaiABP83291; ABP83291; Pmen_0521
GeneIDi5108145
KEGGipmy:Pmen_0521
PATRICifig|399739.8.peg.529

Similar proteinsi

Entry informationi

Entry nameiUBIB_PSEMY
AccessioniPrimary (citable) accession number: A4XPM5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: May 29, 2007
Last modified: February 28, 2018
This is version 72 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome