Reviewed, UniProtKB/Swiss-Prot A4XNV3 (DADA_PSEMY)

Names and origin

Protein names

Recommended name:
    D-amino acid dehydrogenase small subunit
    EC=1.4.99.1

Gene names

Name:	dadA
Ordered Locus Names:	Pmen_0245

Organism

Pseudomonas mendocina (strain ymp) [Complete proteome] [HAMAP]

Taxonomic identifier

399739 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

Protein attributes

Sequence length	432 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Oxidative deamination of D-amino acids By similarity.
Catalytic activity	A D-amino acid + H(2)O + acceptor = a 2-oxo acid + NH(3) + reduced acceptor.
Cofactor	FAD By similarity.
Pathway	Amino-acid degradation; D-alanine degradation; NH(3) and pyruvate from D-alanine: step 1/1.
Subunit structure	Heterodimer of a small and a large subunit By similarity.
Sequence similarities	Belongs to the dadA oxidoreductase family.

Ontologies

Keywords
Ligand	FAD Flavoprotein
Molecular function	Oxidoreductase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	alanine catabolic process Inferred from electronic annotation. Source: HAMAP oxidation reduction Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	D-amino-acid dehydrogenase activity Inferred from electronic annotation. Source: HAMAP binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 432	432	D-amino acid dehydrogenase small subunit		PRO_1000066106
Regions
	Nucleotide binding	3 – 17	15	FAD Potential

Sequences

	Sequence		Length	Mass (Da)
	A4XNV3-1 [UniParc]. Last modified May 29, 2007. Version 1. Checksum: 57F7B7AFF918FCD0	FASTA	432	46,908
	10 20 30 40 50 60 MRVLVLGSGV IGTASAYYLA RQGHEVVVVD RQNGPALETS FANAGQVSPG YASPWAAPGV 70 80 90 100 110 120 PLKAIKWLLQ KHAPLAIKAT GDVDQYLWMA QMLRNCTAAR YAVNKERMVR LSEYSRDCLD 130 140 150 160 170 180 ELRAETGIAY EGRQLGTTQL FRTQAQVDAA AKDIAVLEAS GVPFELLDRD AIARVEPALA 190 200 210 220 230 240 GVKHKLAGAL RLPNDQTGDC QMFTTKLADM AKALGVEFRF GQNIQRLDAV GDRLNGVWID 250 260 270 280 290 300 GKLETADRYV LALGSYSPQL LKPLGVRAPV YPLKGYSLTV PITNAEMAPT STILDETYKV 310 320 330 340 350 360 AITRFDNRIR VGGMAEIAGF DLSLNPRRRE TLEMITADLY PQGGDLSQAE FWTGLRPATP 370 380 390 400 410 420 DGTPIVGATA YRNLFLNTGH GTLGWTMACG SGRLLADLIG SKRPQISAEG LDISRYSGKN 430 RELEAAPQPL RT

References

[1]

"Complete sequence of Pseudomonas mendocina ymp." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Detter J.C., Bruce D., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. , Mikhailova N., Hersman L., Dubois J., Maurice P., Richardson P. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP000680 Genomic DNA. Translation: ABP83019.1.
RefSeq	YP_001185751.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	5106212.
GenomeReviews	Gene locus Pmen_0245 in contig CP000680_GR.
KEGG	pmy:Pmen_0245.
Organism-specific databases
CMR	Search...
Family and domain databases
HAMAP	MF_01202. [Tree]
InterPro	IPR006076. FAD-dep_OxRdtase. IPR016040. NAD(P)-bd. [Graphical view]
Gene3D	G3DSA:3.40.50.720. NAD(P)-bd. 1 hit.
Pfam	PF01266. DAO. 1 hit. [Graphical view]
ProDom	PD000139. FAD_pyr_redox. 1 hit. [Graphical view] [Entries sharing at least one domain]
ProtoNet	Search...

Entry information

Entry name

DADA_PSEMY

Accession

Primary (citable) accession number: A4XNV3

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 5, 2008
Last sequence update:	May 29, 2007
Last modified:	November 25, 2008
This is version 14 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)