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Protein
Submitted name:

Type III secretion outer membrane pore, YscC/HrcC family

Gene

Pmen_0023

Organism
Pseudomonas mendocina (strain ymp)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Enzyme and pathway databases

BioCyciPMEN399739:GHR6-23-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Type III secretion outer membrane pore, YscC/HrcC familyImported
Gene namesi
Ordered Locus Names:Pmen_0023Imported
OrganismiPseudomonas mendocina (strain ymp)Imported
Taxonomic identifieri399739 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000000229 Componenti: Chromosome

Subcellular locationi

  • Cell outer membrane UniRule annotation

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121Sequence analysisAdd
BLAST
Chaini22 – 696675Sequence analysisPRO_5002675702Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi399739.Pmen_0023.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini174 – 316143Secretin_NInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the GSP D family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105K44. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000270092.
KOiK03219.
OMAiYLMARIS.
OrthoDBiEOG6423BN.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR004845. T2SS_GspD_CS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
PROSITEiPS00875. T2SP_D. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4XN82-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRNTLISLSW LLWLVSIPAH AVPPESWKQT AYAYDARQTD LNSALADFAR
60 70 80 90 100
EFGLSLDMPP MDGIVDGRIR ASNPQEFLER LGREYQFQWF VYNETLYISP
110 120 130 140 150
TREQTSARIE VSPDAVDDLE NALTAIGLLD PRFGWGTLPE EGLVLVRGPA
160 170 180 190 200
QYVQFIREYS QKVEEPEKAE KQDVIVFTLK YANAADRSIR YRDQELRVAG
210 220 230 240 250
VASILRELLE TRSRGEPISG VGIFQPSGTT QGLAPTRPMG LPYAGMSGLD
260 270 280 290 300
GGLLEQGLDN VLGLAQSSSR KRSESRSRSQ IRVSADVRNN AVLIYDLPER
310 320 330 340 350
KAIYQGLIQQ LDVPRNLIEI DAVILDIDRN ELAELSSRWA FNSGSVSGGA
360 370 380 390 400
NLFEPGTTST LFIQDAGRFA AELRALEGTG AASIMGNPSI LTLENQPAVI
410 420 430 440 450
DFSRTEYLTA LAERVANIQP ITAGTSLQVI PRSLNQGSRS QVQLIVDIED
460 470 480 490 500
GQIIESNISE EQPSVRRGNV STQAVIAEHG SLVIGGFHSL EANDRINKIP
510 520 530 540 550
LLGDIPVIGK LLFQSRNREF NRRERLFILT PRLIGDQVNP ARYVQHGNPH
560 570 580 590 600
NLDRQLREID ERRRGTERPS RGDIEHAFTQ LLDGIHPSGF DSAPLPLRAE
610 620 630 640 650
TLCNSDHGLT LDAERSQWFA RDGWGVAVVV ARNDTAQPIR IDESRCGGRW
660 670 680 690
AMGVSAWPRA WLQPGEESEV FIALRQPQSL QKTGQGRTSL LHRSTP
Length:696
Mass (Da):77,249
Last modified:May 29, 2007 - v1
Checksum:iB3FEB0C06E245A2B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000680 Genomic DNA. Translation: ABP82798.1.
RefSeqiWP_011920379.1. NC_009439.1.

Genome annotation databases

EnsemblBacteriaiABP82798; ABP82798; Pmen_0023.
GeneIDi5106698.
KEGGipmy:Pmen_0023.
PATRICi19906445. VBIPseMen131592_0023.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000680 Genomic DNA. Translation: ABP82798.1.
RefSeqiWP_011920379.1. NC_009439.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi399739.Pmen_0023.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABP82798; ABP82798; Pmen_0023.
GeneIDi5106698.
KEGGipmy:Pmen_0023.
PATRICi19906445. VBIPseMen131592_0023.

Phylogenomic databases

eggNOGiENOG4105K44. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000270092.
KOiK03219.
OMAiYLMARIS.
OrthoDBiEOG6423BN.

Enzyme and pathway databases

BioCyciPMEN399739:GHR6-23-MONOMER.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR004845. T2SS_GspD_CS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
PROSITEiPS00875. T2SP_D. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ympImported.

Entry informationi

Entry nameiA4XN82_PSEMY
AccessioniPrimary (citable) accession number: A4XN82
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: March 16, 2016
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.