Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

A4XN72

- SYGB_PSEMY

UniProt

A4XN72 - SYGB_PSEMY

Protein

Glycine--tRNA ligase beta subunit

Gene

glyS

Organism
Pseudomonas mendocina (strain ymp)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 50 (01 Oct 2014)
      Sequence version 1 (29 May 2007)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Catalytic activityi

    ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).UniRule annotation

    GO - Molecular functioni

    1. arginine-tRNA ligase activity Source: InterPro
    2. ATP binding Source: UniProtKB-KW
    3. glycine-tRNA ligase activity Source: UniProtKB-EC

    GO - Biological processi

    1. arginyl-tRNA aminoacylation Source: InterPro
    2. glycyl-tRNA aminoacylation Source: InterPro

    Keywords - Molecular functioni

    Aminoacyl-tRNA synthetase, Ligase

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    ATP-binding, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciPMEN399739:GHR6-13-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glycine--tRNA ligase beta subunitUniRule annotation (EC:6.1.1.14UniRule annotation)
    Alternative name(s):
    Glycyl-tRNA synthetase beta subunitUniRule annotation
    Short name:
    GlyRSUniRule annotation
    Gene namesi
    Name:glySUniRule annotation
    Ordered Locus Names:Pmen_0013
    OrganismiPseudomonas mendocina (strain ymp)
    Taxonomic identifieri399739 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000000229: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 684684Glycine--tRNA ligase beta subunitPRO_1000006391Add
    BLAST

    Interactioni

    Subunit structurei

    Tetramer of two alpha and two beta subunits.UniRule annotation

    Protein-protein interaction databases

    STRINGi399739.Pmen_0013.

    Structurei

    3D structure databases

    ProteinModelPortaliA4XN72.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the class-II aminoacyl-tRNA synthetase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0751.
    HOGENOMiHOG000264302.
    KOiK01879.
    OMAiLPIPKRM.
    OrthoDBiEOG661H9S.

    Family and domain databases

    HAMAPiMF_00255. Gly_tRNA_synth_beta.
    InterProiIPR008909. DALR_anticod-bd.
    IPR015944. Gly-tRNA-synth_bsu.
    IPR006194. Gly-tRNA-synth_heterodimer.
    [Graphical view]
    PfamiPF05746. DALR_1. 1 hit.
    PF02092. tRNA_synt_2f. 1 hit.
    [Graphical view]
    PRINTSiPR01045. TRNASYNTHGB.
    SMARTiSM00836. DALR_1. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00211. glyS. 1 hit.
    PROSITEiPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A4XN72-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSAKDFLVEL GTEELPPKAL KSLGDAFLAG IEKGLKAAGL NYAASRVYAA    50
    PRRLAVLVEQ LEEQQADRSM NLDGPPIQAA FDADGNPTQA ALGFARKCGV 100
    DIAEIDRSGA KLRFAQHIPG QPAVNLLPTI VQDSLNDLPI PKRMRWAARR 150
    DEFVRPTQWL VMLFGDAVVD CEILAQKAGR VSRGHRFHAN REVRISSPAN 200
    YAEDLRSAYV LADFAERREI ISRRVDELAA AEQGTAIVPP ALLDEVTALV 250
    EWPVPLVCSF EERFLEVPQE ALISTMQDNQ KYFCLLDAGG KLLPRFITVA 300
    NIESKDPAQI VSGNEKVVRP RLTDAEFFFK QDKKQKLEGF NQRLANVVFQ 350
    AQLGSVFDKA QRVSALAGFI AREVGGDEAR AARAGLLSKC DLATEMVGEF 400
    PEMQGIAGYY YALNDGEPQD VALALNEQYM PRGAGAELPS TLTGAAVAVA 450
    DKLDTLVGIF GIGMLPTGSK DPYALRRAAL GVLRILIEKG LDLDLAAAVD 500
    FAVAQYAGKV KSDGLAAQVL EFIFDRLRAR YEDEGIEVAV YQAVRAVNPT 550
    SPLDFDQRVQ AVQAFRKLPQ AEALAAANKR VSNLLSKAEG GVAAQVEAHY 600
    FDNPSEFALH AAIQQADQAV QPLAAARQYN EALAKLASLR EPVDAFFEAV 650
    LVNAEDARVR ANRYALLARL RGLFLGVADI SVLG 684
    Length:684
    Mass (Da):74,341
    Last modified:May 29, 2007 - v1
    Checksum:i639F5C38F18D11A0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000680 Genomic DNA. Translation: ABP82788.1.
    RefSeqiYP_001185520.1. NC_009439.1.

    Genome annotation databases

    EnsemblBacteriaiABP82788; ABP82788; Pmen_0013.
    GeneIDi5106688.
    KEGGipmy:Pmen_0013.
    PATRICi19906427. VBIPseMen131592_0014.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000680 Genomic DNA. Translation: ABP82788.1 .
    RefSeqi YP_001185520.1. NC_009439.1.

    3D structure databases

    ProteinModelPortali A4XN72.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 399739.Pmen_0013.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABP82788 ; ABP82788 ; Pmen_0013 .
    GeneIDi 5106688.
    KEGGi pmy:Pmen_0013.
    PATRICi 19906427. VBIPseMen131592_0014.

    Phylogenomic databases

    eggNOGi COG0751.
    HOGENOMi HOG000264302.
    KOi K01879.
    OMAi LPIPKRM.
    OrthoDBi EOG661H9S.

    Enzyme and pathway databases

    BioCyci PMEN399739:GHR6-13-MONOMER.

    Family and domain databases

    HAMAPi MF_00255. Gly_tRNA_synth_beta.
    InterProi IPR008909. DALR_anticod-bd.
    IPR015944. Gly-tRNA-synth_bsu.
    IPR006194. Gly-tRNA-synth_heterodimer.
    [Graphical view ]
    Pfami PF05746. DALR_1. 1 hit.
    PF02092. tRNA_synt_2f. 1 hit.
    [Graphical view ]
    PRINTSi PR01045. TRNASYNTHGB.
    SMARTi SM00836. DALR_1. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00211. glyS. 1 hit.
    PROSITEi PS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ymp.

    Entry informationi

    Entry nameiSYGB_PSEMY
    AccessioniPrimary (citable) accession number: A4XN72
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 15, 2008
    Last sequence update: May 29, 2007
    Last modified: October 1, 2014
    This is version 50 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Aminoacyl-tRNA synthetases
      List of aminoacyl-tRNA synthetase entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3