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A4XN72

- SYGB_PSEMY

UniProt

A4XN72 - SYGB_PSEMY

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Protein

Glycine--tRNA ligase beta subunit

Gene

glyS

Organism
Pseudomonas mendocina (strain ymp)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).UniRule annotation

GO - Molecular functioni

  1. arginine-tRNA ligase activity Source: InterPro
  2. ATP binding Source: UniProtKB-KW
  3. glycine-tRNA ligase activity Source: UniProtKB-EC

GO - Biological processi

  1. arginyl-tRNA aminoacylation Source: InterPro
  2. glycyl-tRNA aminoacylation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Aminoacyl-tRNA synthetase, Ligase

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciPMEN399739:GHR6-13-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycine--tRNA ligase beta subunitUniRule annotation (EC:6.1.1.14UniRule annotation)
Alternative name(s):
Glycyl-tRNA synthetase beta subunitUniRule annotation
Short name:
GlyRSUniRule annotation
Gene namesi
Name:glySUniRule annotation
Ordered Locus Names:Pmen_0013
OrganismiPseudomonas mendocina (strain ymp)
Taxonomic identifieri399739 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000229: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 684684Glycine--tRNA ligase beta subunitPRO_1000006391Add
BLAST

Interactioni

Subunit structurei

Tetramer of two alpha and two beta subunits.UniRule annotation

Protein-protein interaction databases

STRINGi399739.Pmen_0013.

Structurei

3D structure databases

ProteinModelPortaliA4XN72.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the class-II aminoacyl-tRNA synthetase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0751.
HOGENOMiHOG000264302.
KOiK01879.
OMAiLPIPKRM.
OrthoDBiEOG661H9S.

Family and domain databases

HAMAPiMF_00255. Gly_tRNA_synth_beta.
InterProiIPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view]
PfamiPF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view]
PRINTSiPR01045. TRNASYNTHGB.
SMARTiSM00836. DALR_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00211. glyS. 1 hit.
PROSITEiPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4XN72-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSAKDFLVEL GTEELPPKAL KSLGDAFLAG IEKGLKAAGL NYAASRVYAA
60 70 80 90 100
PRRLAVLVEQ LEEQQADRSM NLDGPPIQAA FDADGNPTQA ALGFARKCGV
110 120 130 140 150
DIAEIDRSGA KLRFAQHIPG QPAVNLLPTI VQDSLNDLPI PKRMRWAARR
160 170 180 190 200
DEFVRPTQWL VMLFGDAVVD CEILAQKAGR VSRGHRFHAN REVRISSPAN
210 220 230 240 250
YAEDLRSAYV LADFAERREI ISRRVDELAA AEQGTAIVPP ALLDEVTALV
260 270 280 290 300
EWPVPLVCSF EERFLEVPQE ALISTMQDNQ KYFCLLDAGG KLLPRFITVA
310 320 330 340 350
NIESKDPAQI VSGNEKVVRP RLTDAEFFFK QDKKQKLEGF NQRLANVVFQ
360 370 380 390 400
AQLGSVFDKA QRVSALAGFI AREVGGDEAR AARAGLLSKC DLATEMVGEF
410 420 430 440 450
PEMQGIAGYY YALNDGEPQD VALALNEQYM PRGAGAELPS TLTGAAVAVA
460 470 480 490 500
DKLDTLVGIF GIGMLPTGSK DPYALRRAAL GVLRILIEKG LDLDLAAAVD
510 520 530 540 550
FAVAQYAGKV KSDGLAAQVL EFIFDRLRAR YEDEGIEVAV YQAVRAVNPT
560 570 580 590 600
SPLDFDQRVQ AVQAFRKLPQ AEALAAANKR VSNLLSKAEG GVAAQVEAHY
610 620 630 640 650
FDNPSEFALH AAIQQADQAV QPLAAARQYN EALAKLASLR EPVDAFFEAV
660 670 680
LVNAEDARVR ANRYALLARL RGLFLGVADI SVLG
Length:684
Mass (Da):74,341
Last modified:May 29, 2007 - v1
Checksum:i639F5C38F18D11A0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000680 Genomic DNA. Translation: ABP82788.1.
RefSeqiWP_011920371.1. NC_009439.1.
YP_001185520.1. NC_009439.1.

Genome annotation databases

EnsemblBacteriaiABP82788; ABP82788; Pmen_0013.
GeneIDi5106688.
KEGGipmy:Pmen_0013.
PATRICi19906427. VBIPseMen131592_0014.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000680 Genomic DNA. Translation: ABP82788.1 .
RefSeqi WP_011920371.1. NC_009439.1.
YP_001185520.1. NC_009439.1.

3D structure databases

ProteinModelPortali A4XN72.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 399739.Pmen_0013.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABP82788 ; ABP82788 ; Pmen_0013 .
GeneIDi 5106688.
KEGGi pmy:Pmen_0013.
PATRICi 19906427. VBIPseMen131592_0014.

Phylogenomic databases

eggNOGi COG0751.
HOGENOMi HOG000264302.
KOi K01879.
OMAi LPIPKRM.
OrthoDBi EOG661H9S.

Enzyme and pathway databases

BioCyci PMEN399739:GHR6-13-MONOMER.

Family and domain databases

HAMAPi MF_00255. Gly_tRNA_synth_beta.
InterProi IPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view ]
Pfami PF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view ]
PRINTSi PR01045. TRNASYNTHGB.
SMARTi SM00836. DALR_1. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00211. glyS. 1 hit.
PROSITEi PS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ymp.

Entry informationi

Entry nameiSYGB_PSEMY
AccessioniPrimary (citable) accession number: A4XN72
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: May 29, 2007
Last modified: November 26, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Aminoacyl-tRNA synthetases
    List of aminoacyl-tRNA synthetase entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3