Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Glycine--tRNA ligase beta subunit

Gene

glyS

Organism
Pseudomonas mendocina (strain ymp)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Aminoacyl-tRNA synthetase, Ligase

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciPMEN399739:GHR6-13-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycine--tRNA ligase beta subunitUniRule annotation (EC:6.1.1.14UniRule annotation)
Alternative name(s):
Glycyl-tRNA synthetase beta subunitUniRule annotation
Short name:
GlyRSUniRule annotation
Gene namesi
Name:glySUniRule annotation
Ordered Locus Names:Pmen_0013
OrganismiPseudomonas mendocina (strain ymp)
Taxonomic identifieri399739 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000229 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 684684Glycine--tRNA ligase beta subunitPRO_1000006391Add
BLAST

Interactioni

Subunit structurei

Tetramer of two alpha and two beta subunits.UniRule annotation

Protein-protein interaction databases

STRINGi399739.Pmen_0013.

Structurei

3D structure databases

ProteinModelPortaliA4XN72.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the class-II aminoacyl-tRNA synthetase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0751.
HOGENOMiHOG000264302.
KOiK01879.
OMAiFARPIRW.
OrthoDBiEOG661H9S.

Family and domain databases

HAMAPiMF_00255. Gly_tRNA_synth_beta.
InterProiIPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view]
PfamiPF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view]
PRINTSiPR01045. TRNASYNTHGB.
SMARTiSM00836. DALR_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00211. glyS. 1 hit.
PROSITEiPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4XN72-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSAKDFLVEL GTEELPPKAL KSLGDAFLAG IEKGLKAAGL NYAASRVYAA
60 70 80 90 100
PRRLAVLVEQ LEEQQADRSM NLDGPPIQAA FDADGNPTQA ALGFARKCGV
110 120 130 140 150
DIAEIDRSGA KLRFAQHIPG QPAVNLLPTI VQDSLNDLPI PKRMRWAARR
160 170 180 190 200
DEFVRPTQWL VMLFGDAVVD CEILAQKAGR VSRGHRFHAN REVRISSPAN
210 220 230 240 250
YAEDLRSAYV LADFAERREI ISRRVDELAA AEQGTAIVPP ALLDEVTALV
260 270 280 290 300
EWPVPLVCSF EERFLEVPQE ALISTMQDNQ KYFCLLDAGG KLLPRFITVA
310 320 330 340 350
NIESKDPAQI VSGNEKVVRP RLTDAEFFFK QDKKQKLEGF NQRLANVVFQ
360 370 380 390 400
AQLGSVFDKA QRVSALAGFI AREVGGDEAR AARAGLLSKC DLATEMVGEF
410 420 430 440 450
PEMQGIAGYY YALNDGEPQD VALALNEQYM PRGAGAELPS TLTGAAVAVA
460 470 480 490 500
DKLDTLVGIF GIGMLPTGSK DPYALRRAAL GVLRILIEKG LDLDLAAAVD
510 520 530 540 550
FAVAQYAGKV KSDGLAAQVL EFIFDRLRAR YEDEGIEVAV YQAVRAVNPT
560 570 580 590 600
SPLDFDQRVQ AVQAFRKLPQ AEALAAANKR VSNLLSKAEG GVAAQVEAHY
610 620 630 640 650
FDNPSEFALH AAIQQADQAV QPLAAARQYN EALAKLASLR EPVDAFFEAV
660 670 680
LVNAEDARVR ANRYALLARL RGLFLGVADI SVLG
Length:684
Mass (Da):74,341
Last modified:May 29, 2007 - v1
Checksum:i639F5C38F18D11A0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000680 Genomic DNA. Translation: ABP82788.1.
RefSeqiWP_011920371.1. NC_009439.1.
YP_001185520.1. NC_009439.1.

Genome annotation databases

EnsemblBacteriaiABP82788; ABP82788; Pmen_0013.
GeneIDi5106688.
KEGGipmy:Pmen_0013.
PATRICi19906427. VBIPseMen131592_0014.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000680 Genomic DNA. Translation: ABP82788.1.
RefSeqiWP_011920371.1. NC_009439.1.
YP_001185520.1. NC_009439.1.

3D structure databases

ProteinModelPortaliA4XN72.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi399739.Pmen_0013.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABP82788; ABP82788; Pmen_0013.
GeneIDi5106688.
KEGGipmy:Pmen_0013.
PATRICi19906427. VBIPseMen131592_0014.

Phylogenomic databases

eggNOGiCOG0751.
HOGENOMiHOG000264302.
KOiK01879.
OMAiFARPIRW.
OrthoDBiEOG661H9S.

Enzyme and pathway databases

BioCyciPMEN399739:GHR6-13-MONOMER.

Family and domain databases

HAMAPiMF_00255. Gly_tRNA_synth_beta.
InterProiIPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view]
PfamiPF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view]
PRINTSiPR01045. TRNASYNTHGB.
SMARTiSM00836. DALR_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00211. glyS. 1 hit.
PROSITEiPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ymp.

Entry informationi

Entry nameiSYGB_PSEMY
AccessioniPrimary (citable) accession number: A4XN72
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: May 29, 2007
Last modified: May 27, 2015
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Aminoacyl-tRNA synthetases
    List of aminoacyl-tRNA synthetase entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.