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A4XN72

- SYGB_PSEMY

UniProt

A4XN72 - SYGB_PSEMY

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Protein
Glycine--tRNA ligase beta subunit
Gene
glyS, Pmen_0013
Organism
Pseudomonas mendocina (strain ymp)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. arginine-tRNA ligase activity Source: InterPro
  3. glycine-tRNA ligase activity Source: UniProtKB-EC

GO - Biological processi

  1. arginyl-tRNA aminoacylation Source: InterPro
  2. glycyl-tRNA aminoacylation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Aminoacyl-tRNA synthetase, Ligase

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciPMEN399739:GHR6-13-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycine--tRNA ligase beta subunit (EC:6.1.1.14)
Alternative name(s):
Glycyl-tRNA synthetase beta subunit
Short name:
GlyRS
Gene namesi
Name:glyS
Ordered Locus Names:Pmen_0013
OrganismiPseudomonas mendocina (strain ymp)
Taxonomic identifieri399739 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000229: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 684684Glycine--tRNA ligase beta subunitUniRule annotation
PRO_1000006391Add
BLAST

Interactioni

Subunit structurei

Tetramer of two alpha and two beta subunits By similarity.

Protein-protein interaction databases

STRINGi399739.Pmen_0013.

Structurei

3D structure databases

ProteinModelPortaliA4XN72.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0751.
HOGENOMiHOG000264302.
KOiK01879.
OMAiLPIPKRM.
OrthoDBiEOG661H9S.

Family and domain databases

HAMAPiMF_00255. Gly_tRNA_synth_beta.
InterProiIPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view]
PfamiPF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view]
PRINTSiPR01045. TRNASYNTHGB.
SMARTiSM00836. DALR_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00211. glyS. 1 hit.
PROSITEiPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4XN72-1 [UniParc]FASTAAdd to Basket

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MSAKDFLVEL GTEELPPKAL KSLGDAFLAG IEKGLKAAGL NYAASRVYAA    50
PRRLAVLVEQ LEEQQADRSM NLDGPPIQAA FDADGNPTQA ALGFARKCGV 100
DIAEIDRSGA KLRFAQHIPG QPAVNLLPTI VQDSLNDLPI PKRMRWAARR 150
DEFVRPTQWL VMLFGDAVVD CEILAQKAGR VSRGHRFHAN REVRISSPAN 200
YAEDLRSAYV LADFAERREI ISRRVDELAA AEQGTAIVPP ALLDEVTALV 250
EWPVPLVCSF EERFLEVPQE ALISTMQDNQ KYFCLLDAGG KLLPRFITVA 300
NIESKDPAQI VSGNEKVVRP RLTDAEFFFK QDKKQKLEGF NQRLANVVFQ 350
AQLGSVFDKA QRVSALAGFI AREVGGDEAR AARAGLLSKC DLATEMVGEF 400
PEMQGIAGYY YALNDGEPQD VALALNEQYM PRGAGAELPS TLTGAAVAVA 450
DKLDTLVGIF GIGMLPTGSK DPYALRRAAL GVLRILIEKG LDLDLAAAVD 500
FAVAQYAGKV KSDGLAAQVL EFIFDRLRAR YEDEGIEVAV YQAVRAVNPT 550
SPLDFDQRVQ AVQAFRKLPQ AEALAAANKR VSNLLSKAEG GVAAQVEAHY 600
FDNPSEFALH AAIQQADQAV QPLAAARQYN EALAKLASLR EPVDAFFEAV 650
LVNAEDARVR ANRYALLARL RGLFLGVADI SVLG 684
Length:684
Mass (Da):74,341
Last modified:May 29, 2007 - v1
Checksum:i639F5C38F18D11A0
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000680 Genomic DNA. Translation: ABP82788.1.
RefSeqiYP_001185520.1. NC_009439.1.

Genome annotation databases

EnsemblBacteriaiABP82788; ABP82788; Pmen_0013.
GeneIDi5106688.
KEGGipmy:Pmen_0013.
PATRICi19906427. VBIPseMen131592_0014.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000680 Genomic DNA. Translation: ABP82788.1 .
RefSeqi YP_001185520.1. NC_009439.1.

3D structure databases

ProteinModelPortali A4XN72.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 399739.Pmen_0013.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABP82788 ; ABP82788 ; Pmen_0013 .
GeneIDi 5106688.
KEGGi pmy:Pmen_0013.
PATRICi 19906427. VBIPseMen131592_0014.

Phylogenomic databases

eggNOGi COG0751.
HOGENOMi HOG000264302.
KOi K01879.
OMAi LPIPKRM.
OrthoDBi EOG661H9S.

Enzyme and pathway databases

BioCyci PMEN399739:GHR6-13-MONOMER.

Family and domain databases

HAMAPi MF_00255. Gly_tRNA_synth_beta.
InterProi IPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view ]
Pfami PF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view ]
PRINTSi PR01045. TRNASYNTHGB.
SMARTi SM00836. DALR_1. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00211. glyS. 1 hit.
PROSITEi PS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ymp.

Entry informationi

Entry nameiSYGB_PSEMY
AccessioniPrimary (citable) accession number: A4XN72
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: May 29, 2007
Last modified: May 14, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Aminoacyl-tRNA synthetases
    List of aminoacyl-tRNA synthetase entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi