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A4XBU1

- A4XBU1_SALTO

UniProt

A4XBU1 - A4XBU1_SALTO

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Protein
Submitted name:

ATP dependent DNA ligase

Gene
Strop_3968
Organism
Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSTRO369723:GI49-4020-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Strop_3968Imported
OrganismiSalinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)Imported
Taxonomic identifieri369723 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicromonosporineaeMicromonosporaceaeSalinispora
ProteomesiUP000000235: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi369723.Strop_3968.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
KOiK01971.
OMAiVEVKYGQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4XBU1-1 [UniParc]FASTAAdd to Basket

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MPGVPPKPML ATTGELPAGA GWAYEFKWDG IRALVNIGDG QHRVYARSGV    50
QVTVAYPELA GLPAQVDDVL LDGEVVLFGE TGQPSFTALA ERMHVRDRGR 100
AARLAASLPI TYLVFDLLRL DGIDLTGYSW QRRRAVLDEL GLAGPRWAVP 150
PAFTDGPATL QAAGEHGLEG VMAKRVGSVY RPGTRSPDWV KVKLEVTGDF 200
VVGGWRPGAR RLGGLLVGVP RSDGRLAYRG RVGGGIGAAL ERELLRELEP 250
LRTGASPFVG DLPREDTRAV VWVAPRVVVE VKYGQLTPDG RLRFPRVLRL 300
RPDKLAEEVD DV 312
Length:312
Mass (Da):33,835
Last modified:May 29, 2007 - v1
Checksum:iA8B9C08B77C66444
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000667 Genomic DNA. Translation: ABP56398.1.
RefSeqiWP_012015166.1. NC_009380.1.
YP_001160776.1. NC_009380.1.

Genome annotation databases

EnsemblBacteriaiABP56398; ABP56398; Strop_3968.
GeneIDi5060449.
KEGGistp:Strop_3968.
PATRICi23447144. VBISalTro43511_4097.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000667 Genomic DNA. Translation: ABP56398.1 .
RefSeqi WP_012015166.1. NC_009380.1.
YP_001160776.1. NC_009380.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 369723.Strop_3968.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABP56398 ; ABP56398 ; Strop_3968 .
GeneIDi 5060449.
KEGGi stp:Strop_3968.
PATRICi 23447144. VBISalTro43511_4097.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000222509.
KOi K01971.
OMAi VEVKYGQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci STRO369723:GI49-4020-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Salinispora tropica CNB-440."
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Sun H., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Jensen P.R., Moore B.S., Udwary D.W., Richardson P.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-916 / DSM 44818 / CNB-440.

Entry informationi

Entry nameiA4XBU1_SALTO
AccessioniPrimary (citable) accession number: A4XBU1
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: September 3, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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