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A4XBU1 (A4XBU1_SALTO) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Strop_3968 EMBL ABP56398.1
OrganismSalinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) [Complete proteome] [HAMAP] EMBL ABP56398.1
Taxonomic identifier369723 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesMicromonosporineaeMicromonosporaceaeSalinispora

Protein attributes

Sequence length312 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
A4XBU1 [UniParc].

Last modified May 29, 2007. Version 1.
Checksum: A8B9C08B77C66444

FASTA31233,835
        10         20         30         40         50         60 
MPGVPPKPML ATTGELPAGA GWAYEFKWDG IRALVNIGDG QHRVYARSGV QVTVAYPELA 

        70         80         90        100        110        120 
GLPAQVDDVL LDGEVVLFGE TGQPSFTALA ERMHVRDRGR AARLAASLPI TYLVFDLLRL 

       130        140        150        160        170        180 
DGIDLTGYSW QRRRAVLDEL GLAGPRWAVP PAFTDGPATL QAAGEHGLEG VMAKRVGSVY 

       190        200        210        220        230        240 
RPGTRSPDWV KVKLEVTGDF VVGGWRPGAR RLGGLLVGVP RSDGRLAYRG RVGGGIGAAL 

       250        260        270        280        290        300 
ERELLRELEP LRTGASPFVG DLPREDTRAV VWVAPRVVVE VKYGQLTPDG RLRFPRVLRL 

       310 
RPDKLAEEVD DV 

« Hide

References

[1]"Complete sequence of Salinispora tropica CNB-440."
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Sun H., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Jensen P.R., Moore B.S., Udwary D.W., Richardson P.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-916 / DSM 44818 / CNB-440.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000667 Genomic DNA. Translation: ABP56398.1.
RefSeqYP_001160776.1. NC_009380.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING369723.Strop_3968.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABP56398; ABP56398; Strop_3968.
GeneID5060449.
KEGGstp:Strop_3968.
PATRIC23447144. VBISalTro43511_4097.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000222509.
KOK01971.
OMAVEVKYGQ.
OrthoDBEOG661H49.
ProtClustDBCLSK962101.

Enzyme and pathway databases

BioCycSTRO369723:GI49-4020-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA4XBU1_SALTO
AccessionPrimary (citable) accession number: A4XBU1
Entry history
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: February 19, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)