A4XBL9 (A4XBL9_SALTO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
30S ribosomal protein S4 1 HAMAP MF_01306

Gene names

Name:	rpsD1 HAMAP MF_01306
Ordered Locus Names:	Strop_3896

Organism

Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) [Complete proteome] [HAMAP] EMBL ABP56326.1

Taxonomic identifier

369723 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micromonosporineae › Micromonosporaceae › Salinispora

Protein attributes

Sequence length	208 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit By similarity. HAMAP MF_01306 With S5 and S12 plays an important role in translational accuracy By similarity. HAMAP MF_01306
Subunit structure	Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity By similarity. HAMAP MF_01306
Sequence similarities	Belongs to the ribosomal protein S4P family. HAMAP MF_01306 Contains 1 S4 RNA-binding domain. HAMAP MF_01306

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP MF_01306
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP MF_01306 EMBL ABP56326.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	small ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Domain	98 – 163	66	S4 RNA-binding By similarity HAMAP MF_01306

Sequences

	Sequence		Length	Mass (Da)
	A4XBL9 [UniParc]. Last modified May 29, 2007. Version 1. Checksum: 4001CFE2C50A1CBF	FASTA	208	23,864
	10 20 30 40 50 60 MARYTGADCR RCRREKMKLF LKGSKCDGPK CPFESRPFPP GQHGRGRTKE TEYLLQLREK 70 80 90 100 110 120 QKARRVYGVL EKQFRGYYEE AVAKQAKTGE VLLQILESRL DNVVYRAGYA KSRDMARQLV 130 140 150 160 170 180 KHGHFVVNGK KVDIPSYRVK EHDIVEVRGK SKELTPFLVA QAESGSKSVP AWLEAIPSQM 190 200 KVLVHSLPSR QVIDTQVQEQ LIVELYSK

References

[1]

"Complete sequence of Salinispora tropica CNB-440." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Sun H., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Jensen P.R., Moore B.S., Udwary D.W., Richardson P. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000667 Genomic DNA. Translation: ABP56326.1.
RefSeq	YP_001160704.1. NC_009380.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	A4XBL9.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5060374.
GenomeReviews	Gene locus Strop_3896 in contig CP000667_GR.
KEGG	stp:Strop_3896.
PATRIC	23446986. VBISalTro43511_4021.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0522.
HOGENOM	HBG285740.
OMA	QLVVELY.
PhylomeDB	A4XBL9.
ProtClustDB	PRK05327.
Enzyme and pathway databases
BioCyc	STRO369723:STROP_3896-MONOMER.
Family and domain databases
HAMAP	MF_01306_B. Ribosomal_S4_B. [Tree]
InterPro	IPR022801. Ribosomal_S4/S9. IPR001912. Ribosomal_S4/S9_N. IPR005709. Ribosomal_S4_bac-type. IPR018079. Ribosomal_S4_CS. IPR002942. S4_RNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.1050.10. G3DSA:1.10.1050.10. 1 hit. G3DSA:3.10.290.10. G3DSA:3.10.290.10. 1 hit.
KO	K02986.
PANTHER	PTHR11831. Ribosomal_S4. 1 hit.
Pfam	PF00163. Ribosomal_S4. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
TIGRFAMs	TIGR01017. RpsD_bact. 1 hit.
PROSITE	PS00632. RIBOSOMAL_S4. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A4XBL9_SALTO

Accession

Primary (citable) accession number: A4XBL9

Entry history

Integrated into UniProtKB/TrEMBL:	May 29, 2007
Last sequence update:	May 29, 2007
Last modified:	December 14, 2011
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)