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Protein

Alpha-amylase

Gene

Strop_2686

Organism
Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro
  3. starch binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciSTRO369723:GI49-2720-MONOMER.

Protein family/group databases

CAZyiCBM20. Carbohydrate-Binding Module Family 20.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:Strop_2686Imported
OrganismiSalinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)Imported
Taxonomic identifieri369723 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicromonosporineaeMicromonosporaceaeSalinispora
ProteomesiUP000000235 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 4242 PotentialImportedAdd
BLAST
Chaini43 – 722680 PotentialImportedPRO_5000239375Add
BLAST

Proteomic databases

PRIDEiA4X8D0.

Interactioni

Protein-protein interaction databases

STRINGi369723.Strop_2686.

Structurei

3D structure databases

ProteinModelPortaliA4X8D0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000253313.
KOiK01176.
OMAiAWIGIND.
OrthoDBiEOG6RZB1B.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF00686. CBM_20. 2 hits.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00632. Aamy_C. 1 hit.
SM01065. CBM_2. 2 hits.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 2 hits.
SSF51445. SSF51445. 1 hit.
PROSITEiPS51166. CBM20. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A4X8D0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
METARPHPIG RTGRLVLAAA LVAVGGTAVV TAATTATSAR AAVVLNDSEV
60 70 80 90 100
TANLWQWNWD SVAAACTDHL GPAGYGAVQV APPQESVYLP NSADGVHPWY
110 120 130 140 150
EVYQPVSYQL ESRFGNREQF ASMVSTCHDA GVRVYVDAIV NHMAGTNNPP
160 170 180 190 200
GTRGYAGTEF SGYDYPAVPY SGWDFHRPGD NCPTDGSIND WDNVAQVTSC
210 220 230 240 250
ELLSLADLYT EKEYVRDTIA GYLNDLIGLG VDGFRVDAVK HIRKDDFAAI
260 270 280 290 300
LSRLDDTVAE GRRPYVAQEI FDGANNPDLQ ARAFIGNGDV LDFAYAKGIR
310 320 330 340 350
SAFQGSVAAL QNIPNWNLDA PSANVFSMVT NHDLERDGVV LSYKDGTDYV
360 370 380 390 400
LANYFALAYP HGKPSVFDSF TWSDRNQSPP HDGGGYVTDA VCGGTWNCLT
410 420 430 440 450
QSTGIKGMVG WANAARSVQS TADFTVVNDN VIGFHRGDRA WIGINDSGAT
460 470 480 490 500
ATATFTTGLA DGDYCDVISG AAGGAGCTGA TVSVTGGQAT VSIPANDAVA
510 520 530 540 550
IHVNARPGAT PSPTVSPTGD PTDQIATTFT VSATPGADQD VYAVGSISEL
560 570 580 590 600
GSWAPAAAVR LTPQGGNTYR GTIDLPPSTA VEYKFIKVTS GGEVTWESGE
610 620 630 640 650
NRSFTTPASG TFAVTETFRG DVVSGPAIAS SFHATVYTYF GQNAFVIGNV
660 670 680 690 700
AELGSWNPDN AVALSAADYP VWRATVDLPP NTNIEYKYLK KNPDGSVTWE
710 720
SGANRSFTTP ATGTNTNTDT WR
Length:722
Mass (Da):76,315
Last modified:May 29, 2007 - v1
Checksum:i768E10A741F5EFFA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000667 Genomic DNA. Translation: ABP55130.1.
RefSeqiYP_001159508.1. NC_009380.1.

Genome annotation databases

EnsemblBacteriaiABP55130; ABP55130; Strop_2686.
KEGGistp:Strop_2686.
PATRICi23444446. VBISalTro43511_2765.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000667 Genomic DNA. Translation: ABP55130.1.
RefSeqiYP_001159508.1. NC_009380.1.

3D structure databases

ProteinModelPortaliA4X8D0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi369723.Strop_2686.

Protein family/group databases

CAZyiCBM20. Carbohydrate-Binding Module Family 20.
GH13. Glycoside Hydrolase Family 13.

Proteomic databases

PRIDEiA4X8D0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABP55130; ABP55130; Strop_2686.
KEGGistp:Strop_2686.
PATRICi23444446. VBISalTro43511_2765.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000253313.
KOiK01176.
OMAiAWIGIND.
OrthoDBiEOG6RZB1B.

Enzyme and pathway databases

BioCyciSTRO369723:GI49-2720-MONOMER.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF00686. CBM_20. 2 hits.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00632. Aamy_C. 1 hit.
SM01065. CBM_2. 2 hits.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 2 hits.
SSF51445. SSF51445. 1 hit.
PROSITEiPS51166. CBM20. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Salinispora tropica CNB-440."
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Sun H., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Jensen P.R., Moore B.S., Udwary D.W., Richardson P.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-916 / DSM 44818 / CNB-440Imported.

Entry informationi

Entry nameiA4X8D0_SALTO
AccessioniPrimary (citable) accession number: A4X8D0
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: April 29, 2015
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.