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Protein
Submitted name:

Regulatory protein, MerR

Gene

Strop_2029

Organism
Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciSTRO369723:GI49-2063-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Regulatory protein, MerRImported
Gene namesi
Ordered Locus Names:Strop_2029Imported
OrganismiSalinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)Imported
Taxonomic identifieri369723 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicromonosporineaeMicromonosporaceaeSalinispora
ProteomesiUP000000235: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi369723.Strop_2029.

Structurei

3D structure databases

ProteinModelPortaliA4X6I2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0789.
OrthoDBiEOG6CK7SS.

Family and domain databases

InterProiIPR009061. DNA-bd_dom_put.
IPR000551. MerR-type_HTH_dom.
[Graphical view]
PfamiPF13411. MerR_1. 1 hit.
[Graphical view]
SMARTiSM00422. HTH_MERR. 1 hit.
[Graphical view]
SUPFAMiSSF46955. SSF46955. 1 hit.
PROSITEiPS50937. HTH_MERR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4X6I2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVRAGTGPAR GGWHRGAVDD RRVRPSGAAD TKALRRYDKV GLLPPTAVDS
60 70 80 90 100
ESGYRFYDPE QLAHAWLIAQ LRRIGMPLAE IRTVCDLRPD AAARAVSTYW
110 120 130 140 150
QQATADTATR AHHVARLIEH LSRPPLPETR YLLCSDGLSA VVSRGDLHTA
160 170
LAEAGEPEPT AQRPARPAPV AQRRGGAQ
Length:178
Mass (Da):19,355
Last modified:May 29, 2007 - v1
Checksum:i3879469B081C10D4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000667 Genomic DNA. Translation: ABP54482.1.
RefSeqiYP_001158860.1. NC_009380.1.

Genome annotation databases

EnsemblBacteriaiABP54482; ABP54482; Strop_2029.
GeneIDi5058492.
KEGGistp:Strop_2029.
PATRICi23443078. VBISalTro43511_2081.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000667 Genomic DNA. Translation: ABP54482.1.
RefSeqiYP_001158860.1. NC_009380.1.

3D structure databases

ProteinModelPortaliA4X6I2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi369723.Strop_2029.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABP54482; ABP54482; Strop_2029.
GeneIDi5058492.
KEGGistp:Strop_2029.
PATRICi23443078. VBISalTro43511_2081.

Phylogenomic databases

eggNOGiCOG0789.
OrthoDBiEOG6CK7SS.

Enzyme and pathway databases

BioCyciSTRO369723:GI49-2063-MONOMER.

Family and domain databases

InterProiIPR009061. DNA-bd_dom_put.
IPR000551. MerR-type_HTH_dom.
[Graphical view]
PfamiPF13411. MerR_1. 1 hit.
[Graphical view]
SMARTiSM00422. HTH_MERR. 1 hit.
[Graphical view]
SUPFAMiSSF46955. SSF46955. 1 hit.
PROSITEiPS50937. HTH_MERR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Salinispora tropica CNB-440."
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Sun H., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Jensen P.R., Moore B.S., Udwary D.W., Richardson P.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-916 / DSM 44818 / CNB-440Imported.

Entry informationi

Entry nameiA4X6I2_SALTO
AccessioniPrimary (citable) accession number: A4X6I2
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: February 4, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.