A4X329 (A4X329_SALTO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transcriptional regulator, LacI family EMBL ABP53279.1

Gene names

Ordered Locus Names:

Strop_0802

Organism

Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) [Complete proteome] [HAMAP] EMBL ABP53279.1

Taxonomic identifier

369723 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micromonosporineae › Micromonosporaceae › Salinispora › Salinispora tropica

Protein attributes

Sequence length	368 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH lacI-type DNA-binding domain. SAAS SAAS000843

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS000843 RuleBase RU000708
Ligand	DNA-binding SAAS SAAS000843 RuleBase RU000708
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A4X329 [UniParc]. Last modified May 29, 2007. Version 1. Checksum: 3056B050712EE150	FASTA	368	39,382
	10 20 30 40 50 60 MRARLSDIAQ QAEVSEATVS RVLNDRPGVA PETRQAVLTA LDVLGYERPA RLRKRCAGLV 70 80 90 100 110 120 GLVVPELDNP IFPAFAQIIE SALAPTGFTP VLCTQTPGGI REDEYVEMLL DRQVSGIVFV 130 140 150 160 170 180 SGLHADTTAD HDRYRALIAR PLPVVMVNGY APNLRAPFIS CDDREAAELA VTHLVALGHR 190 200 210 220 230 240 RIGLITGPDR FVPVQRKVAG YKAAMRYRTD VSDAELAELT ELSLFGVEGG EAAATRLLDR 250 260 270 280 290 300 GVTGLVCGSD PMALGAIRAA RQRGLTVPRD ISVVGYDDSP LMAFTDPPLT TVRQPVAAMA 310 320 330 340 350 360 IAAVRALVDE INGHAAPHSE YLFRPELVVR GSTAVAQTPD VDPGAPTPSP LAVSVQTPPS ARRDPARR

References

[1]

"Complete sequence of Salinispora tropica CNB-440." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Sun H., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Jensen P.R., Moore B.S., Udwary D.W., Richardson P. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-916 / DSM 44818 / CNB-440.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000667 Genomic DNA. Translation: ABP53279.1.
RefSeq	YP_001157657.1. NC_009380.1.
3D structure databases
ProteinModelPortal	A4X329.
ModBase	Search...
Protein-protein interaction databases
STRING	369723.Strop_0802.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABP53279; ABP53279; Strop_0802.
GeneID	5057245.
KEGG	stp:Strop_0802.
PATRIC	23440505. VBISalTro43511_0814.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1609.
HOGENOM	HOG000220179.
KO	K01775.
OMA	VDEINGH.
ProtClustDB	CLSK902309.
Family and domain databases
Gene3D	1.10.260.40. 1 hit.
InterPro	IPR010982. Lambda_DNA-bd_dom. IPR000843. Tscrpt_reg_HTH_LacI. [Graphical view]
Pfam	PF00356. LacI. 1 hit. [Graphical view]
SMART	SM00354. HTH_LACI. 1 hit. [Graphical view]
SUPFAM	SSF47413. Lambda_like_DNA. 1 hit.
PROSITE	PS00356. HTH_LACI_1. 1 hit. PS50932. HTH_LACI_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A4X329_SALTO

Accession

Primary (citable) accession number: A4X329

Entry history

Integrated into UniProtKB/TrEMBL:	May 29, 2007
Last sequence update:	May 29, 2007
Last modified:	May 1, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)