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Protein
Submitted name:

Transcriptional regulator, LacI family

Gene

Strop_0802

Organism
Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciSTRO369723:GI49-816-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator, LacI familyImported
Gene namesi
Ordered Locus Names:Strop_0802Imported
OrganismiSalinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440)Imported
Taxonomic identifieri369723 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicromonosporineaeMicromonosporaceaeSalinispora
ProteomesiUP000000235: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi369723.Strop_0802.

Structurei

3D structure databases

ProteinModelPortaliA4X329.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains HTH lacI-type DNA-binding domain.SAAS annotation

Phylogenomic databases

eggNOGiCOG1609.
HOGENOMiHOG000220179.
KOiK01775.
OMAiVDEINGH.
OrthoDBiEOG6SJJMM.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiIPR010982. Lambda_DNA-bd_dom.
IPR028082. Peripla_BP_I.
IPR000843. Tscrpt_reg_HTH_LacI.
[Graphical view]
PfamiPF00356. LacI. 1 hit.
[Graphical view]
SMARTiSM00354. HTH_LACI. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
SSF53822. SSF53822. 1 hit.
PROSITEiPS00356. HTH_LACI_1. 1 hit.
PS50932. HTH_LACI_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A4X329-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRARLSDIAQ QAEVSEATVS RVLNDRPGVA PETRQAVLTA LDVLGYERPA
60 70 80 90 100
RLRKRCAGLV GLVVPELDNP IFPAFAQIIE SALAPTGFTP VLCTQTPGGI
110 120 130 140 150
REDEYVEMLL DRQVSGIVFV SGLHADTTAD HDRYRALIAR PLPVVMVNGY
160 170 180 190 200
APNLRAPFIS CDDREAAELA VTHLVALGHR RIGLITGPDR FVPVQRKVAG
210 220 230 240 250
YKAAMRYRTD VSDAELAELT ELSLFGVEGG EAAATRLLDR GVTGLVCGSD
260 270 280 290 300
PMALGAIRAA RQRGLTVPRD ISVVGYDDSP LMAFTDPPLT TVRQPVAAMA
310 320 330 340 350
IAAVRALVDE INGHAAPHSE YLFRPELVVR GSTAVAQTPD VDPGAPTPSP
360
LAVSVQTPPS ARRDPARR
Length:368
Mass (Da):39,382
Last modified:May 29, 2007 - v1
Checksum:i3056B050712EE150
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000667 Genomic DNA. Translation: ABP53279.1.
RefSeqiYP_001157657.1. NC_009380.1.

Genome annotation databases

EnsemblBacteriaiABP53279; ABP53279; Strop_0802.
GeneIDi5057245.
KEGGistp:Strop_0802.
PATRICi23440505. VBISalTro43511_0814.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000667 Genomic DNA. Translation: ABP53279.1.
RefSeqiYP_001157657.1. NC_009380.1.

3D structure databases

ProteinModelPortaliA4X329.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi369723.Strop_0802.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABP53279; ABP53279; Strop_0802.
GeneIDi5057245.
KEGGistp:Strop_0802.
PATRICi23440505. VBISalTro43511_0814.

Phylogenomic databases

eggNOGiCOG1609.
HOGENOMiHOG000220179.
KOiK01775.
OMAiVDEINGH.
OrthoDBiEOG6SJJMM.

Enzyme and pathway databases

BioCyciSTRO369723:GI49-816-MONOMER.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiIPR010982. Lambda_DNA-bd_dom.
IPR028082. Peripla_BP_I.
IPR000843. Tscrpt_reg_HTH_LacI.
[Graphical view]
PfamiPF00356. LacI. 1 hit.
[Graphical view]
SMARTiSM00354. HTH_LACI. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
SSF53822. SSF53822. 1 hit.
PROSITEiPS00356. HTH_LACI_1. 1 hit.
PS50932. HTH_LACI_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Salinispora tropica CNB-440."
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Sun H., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Jensen P.R., Moore B.S., Udwary D.W., Richardson P.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-916 / DSM 44818 / CNB-440Imported.

Entry informationi

Entry nameiA4X329_SALTO
AccessioniPrimary (citable) accession number: A4X329
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2007
Last sequence update: May 29, 2007
Last modified: March 4, 2015
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.